View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_18 (Length: 251)
Name: NF12624_low_18
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 4559390 - 4559171
Alignment:
| Q |
22 |
gcatatgaagattttccnnnnnnnngactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgtta |
121 |
Q |
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| T |
4559390 |
gcatatgaagattttccttttttttgactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgtta |
4559291 |
T |
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| Q |
122 |
gatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttattattagatgcaagttggttacattagggatcttagat |
221 |
Q |
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| T |
4559290 |
gatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttatgattagatgcaagttggttacattagggatcttagat |
4559191 |
T |
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| Q |
222 |
aagcctagtcagaccctatg |
241 |
Q |
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|||||||||||||||||||| |
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| T |
4559190 |
aagcctagtcagaccctatg |
4559171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 4573267 - 4573130
Alignment:
| Q |
52 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaattagtt |
151 |
Q |
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| T |
4573267 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcatatttgttgaaattagtt |
4573168 |
T |
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| Q |
152 |
tgatatttttcaagatagttataagttagttattatta |
189 |
Q |
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| T |
4573167 |
tagtattgtttaagatagttataagttagttatgatta |
4573130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 4566253 - 4566133
Alignment:
| Q |
52 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaattagtt |
151 |
Q |
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| T |
4566253 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatgtagtttcagatttgttaaaattagtt |
4566154 |
T |
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| Q |
152 |
tgatatttttcaagatagtta |
172 |
Q |
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| T |
4566153 |
taatattttggaagatagtta |
4566133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 4615237 - 4615168
Alignment:
| Q |
68 |
tgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
138 |
Q |
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| T |
4615237 |
tgtttgatgatatcttcc-actgaatggttggaatgccatgcatgtattttttagatatagtttgagattt |
4615168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 4591438 - 4591385
Alignment:
| Q |
125 |
atagtttcagatttgttaaaattagtttgatatttttcaagatagttataagtt |
178 |
Q |
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| T |
4591438 |
atagtttgatatttgttagaattagtttcatattttttaggatagttataagtt |
4591385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 16684943 - 16685033
Alignment:
| Q |
48 |
actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
138 |
Q |
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| T |
16684943 |
actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
16685033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 37214216 - 37214283
Alignment:
| Q |
117 |
tgttagatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttat |
184 |
Q |
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||||||| ||||||| | |||||||| |||||||| |||||| || ||| |||||| ||||||||||| |
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| T |
37214216 |
tgttagagatagtttgatatttgttagaattagttggatattgtttaaggtagttaaaagttagttat |
37214283 |
T |
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