View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_19 (Length: 247)
Name: NF12624_low_19
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4559420 - 4559585
Alignment:
| Q |
1 |
tttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccactta |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4559420 |
tttcaaaattgaactagatgacacttttattcaagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccactta |
4559519 |
T |
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| Q |
101 |
tttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac |
166 |
Q |
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| T |
4559520 |
tttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcac |
4559585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4566278 - 4566443
Alignment:
| Q |
1 |
tttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccactta |
100 |
Q |
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|||||||||||||||||| | ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
4566278 |
tttcaaaattgaactagaaggcacttctattcaagtaagtataagatagttctgacatcaaagatttttgttgtacaaagaaaataattatgtccactta |
4566377 |
T |
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| Q |
101 |
tttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac |
166 |
Q |
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| T |
4566378 |
tttattttataatagtctattggctattattttccatgcttgaatcagtcagacattagacatcac |
4566443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4573292 - 4573457
Alignment:
| Q |
1 |
tttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccactta |
100 |
Q |
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|||||||||||||||||| ||||||| ||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4573292 |
tttcaaaattgaactagaagacacttctattcaagtataagatatatagttctgacatcaaagatttttgttgtacaaagaaaataattatgaccactta |
4573391 |
T |
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| Q |
101 |
tttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac |
166 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4573392 |
tttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcac |
4573457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 4560209 - 4560252
Alignment:
| Q |
187 |
acaatttgcatttgcatcatcggtgaatgtttttgaatgttcat |
230 |
Q |
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| T |
4560209 |
acaatttgcatttgcatcatcggtgaatgtttttgaatgttcat |
4560252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 4567935 - 4567977
Alignment:
| Q |
187 |
acaatttgcatttgcatcatcggtgaatgtttttgaatgttca |
229 |
Q |
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| T |
4567935 |
acaatttgcatttgcaacatcagtgaatgtttttgaatgttca |
4567977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 16684881 - 16684742
Alignment:
| Q |
7 |
aattgaactagatgacacttttattctagta--agtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccacttattta |
104 |
Q |
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|||||||||||| ||||||| ||||| |||| ||| ||||| | |||| |||||||| | ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
16684881 |
aattgaactagaagacacttgtattccagtacaagtataagacacttctcacatcaaacacttttgttgtacaaagaaaataattatgtccacttattta |
16684782 |
T |
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| Q |
105 |
ttttataatagtctattggttattattttccatgcttgaa |
144 |
Q |
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|||||| ||||||| |||| |||||||||||||||||||| |
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| T |
16684781 |
ttttatgatagtcttttggctattattttccatgcttgaa |
16684742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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