View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_2 (Length: 588)
Name: NF12624_low_2
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 578
Target Start/End: Original strand, 16212907 - 16213465
Alignment:
| Q |
19 |
gatctgagttgggcaaacttttcttgcattccaaagctgtatgactgataatatggaagcaatggtttctggtgnnnnnnnggtaatgcatcacagcagc |
118 |
Q |
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| T |
16212907 |
gatctgagttgggcaaacttttcttgcattccaaagctgtatgactgataatatggaagcaatggtttctggtgtttttttggtaatgcatcacagcagc |
16213006 |
T |
|
| Q |
119 |
tccaccgcacgattaatcaccatttcaaagtgtaatggnnnnnnnnatgaattccaaggtatagctaaaatcgaaactcaagtccacaccacggtttttg |
218 |
Q |
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| T |
16213007 |
tccaccgcacgattaatcaccatttcaaagtgtaatggttttttt-atgaattccaaggtatagctaaaatcgaaactcaagtccacaccacggtttttg |
16213105 |
T |
|
| Q |
219 |
ttcaatccaaattccaaacacaccctagactcaagtaggcgtacattagtttaacttgcgcatagacaccagttcacagtaatatacattagaaggcaat |
318 |
Q |
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| T |
16213106 |
ttcaatccaaattccaaacacaccctagactcaagtaggcgtacattagtttaacttgcgcatagacaccagttcacagtaatatacattagaaggcaat |
16213205 |
T |
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| Q |
319 |
atattcattagtagcacctatctcaactgtttacaacaactgtttcttttgagatatcaacttatgccaccaggtgatcggataagctcaagtgctcgac |
418 |
Q |
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| T |
16213206 |
atattcattagtagcacctatctcaactgtttacaacaactgtttcttttgagatatcaacttatgccacctggtgatcggataagctcaagtactcgac |
16213305 |
T |
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| Q |
419 |
tgttcaaagccgtacatttgtaaatcaatcattttaccaaactacaaagaaattatctaaaatcaagagacatcatgcagtttactaaacatcttcaagg |
518 |
Q |
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| T |
16213306 |
tgttcaaagccgtacatttgtaaatcaatcattttaccaaactacaaagaaattatctaaaatcaagagacatcatgcagtttactaaacatcttcaagg |
16213405 |
T |
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| Q |
519 |
tcactgattatgtctgattgttatgtaaaactatcaataagcacatgcttggcacctatg |
578 |
Q |
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| T |
16213406 |
tcactgattatgtctgattgttatgtaaaactatcaataagcacatgcttggcacctatg |
16213465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 4e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 413 - 578
Target Start/End: Original strand, 33734679 - 33734844
Alignment:
| Q |
413 |
ctcgactgttcaaagccgtacatttgtaaatcaatcattttaccaaactacaaagaaattatctaaaatcaagagacatcatgcagtttactaaacatct |
512 |
Q |
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| T |
33734679 |
ctcgactgttcaaagccgtacatttgtaaatcaatcattttaccaaactacaaagaaattatctaaaatcaagagacatcatgcagtttactaaacatct |
33734778 |
T |
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| Q |
513 |
tcaaggtcactgattatgtctgattgttatgtaaaactatcaataagcacatgcttggcacctatg |
578 |
Q |
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| T |
33734779 |
tcaaggtcactgattatgtctgattgttatgtaaaactatcaataagcacatgtttggcacctatg |
33734844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 33734497 - 33734633
Alignment:
| Q |
19 |
gatctgagttgggcaaacttttcttgcattccaaagctgtatgactgataatatggaagcaatggtttctggtgnnnnnnnggtaatgcatcacagcagc |
118 |
Q |
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| T |
33734497 |
gatctgagttgggcaaacttttcttgcattccaaagctatacgactgataatatagaagcaatggattctggtgtttttttagtaatgcaacacggcagc |
33734596 |
T |
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| Q |
119 |
tccaccgcacgattaatcaccatttcaaagtgtaatg |
155 |
Q |
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| T |
33734597 |
tccaccgcacgattaatcaccatttcaaagtgtaatg |
33734633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 33734649 - 33734681
Alignment:
| Q |
165 |
atgaattccaaggtatagctaaaatcgaaactc |
197 |
Q |
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| T |
33734649 |
atgaattccaaggtatagctaaaatctaaactc |
33734681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 545
Target Start/End: Complemental strand, 41711795 - 41711725
Alignment:
| Q |
478 |
aaatcaagagacatcatgcagtttacta---aacatcttcaaggtcactgattatgtctgattgttatgta |
545 |
Q |
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| T |
41711795 |
aaatcaagagacaacatgcagtttactaatcaacatcttgaaggccaccaatcatgtctgattgtcatgta |
41711725 |
T |
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