View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_21 (Length: 238)
Name: NF12624_low_21
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 38005509 - 38005691
Alignment:
| Q |
42 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactcg |
141 |
Q |
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| T |
38005509 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactca |
38005608 |
T |
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| Q |
142 |
aatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtt |
224 |
Q |
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| T |
38005609 |
aatgcaatgccgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaacgatgtt |
38005691 |
T |
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Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 26462304 - 26462122
Alignment:
| Q |
42 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactcg |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| || |||||| |||||||||||||| |
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| T |
26462304 |
atacatgtcaccatcttcaccagcccaaatcttacaaaagttacaaaaatcaatttttggtgaaacaggcatttcagatattttgctgtaaaacaactcg |
26462205 |
T |
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| Q |
142 |
aatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtt |
224 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
26462204 |
aatgcaatgcctacgattcgagctcttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaacaacgatgtt |
26462122 |
T |
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