View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12624_low_3 (Length: 565)

Name: NF12624_low_3
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12624_low_3
NF12624_low_3
[»] chr5 (7 HSPs)
chr5 (175-533)||(40314309-40314657)
chr5 (175-533)||(41412881-41413229)
chr5 (175-533)||(1828842-1829190)
chr5 (18-112)||(41413312-41413406)
chr5 (18-112)||(1828666-1828760)
chr5 (18-112)||(40314131-40314225)
chr5 (20-112)||(30625122-30625214)
[»] chr3 (4 HSPs)
chr3 (20-112)||(50650259-50650351)
chr3 (190-278)||(52704385-52704466)
chr3 (190-240)||(55219689-55219739)
chr3 (190-259)||(3890978-3891047)
[»] chr4 (2 HSPs)
chr4 (20-111)||(27293204-27293295)
chr4 (18-112)||(4919268-4919362)
[»] chr1 (3 HSPs)
chr1 (20-111)||(52385682-52385773)
chr1 (22-112)||(27286424-27286514)
chr1 (189-233)||(29521028-29521072)
[»] chr2 (6 HSPs)
chr2 (18-112)||(14096510-14096604)
chr2 (20-86)||(14810034-14810100)
chr2 (20-86)||(17690695-17690761)
chr2 (20-86)||(37261616-37261682)
chr2 (38-79)||(18977037-18977078)
chr2 (189-265)||(27270161-27270237)
[»] chr6 (2 HSPs)
chr6 (20-112)||(12938900-12938992)
chr6 (189-225)||(27929005-27929041)
[»] chr7 (5 HSPs)
chr7 (20-111)||(19436930-19437021)
chr7 (20-112)||(29833812-29833904)
chr7 (20-112)||(29258627-29258718)
chr7 (192-259)||(7847127-7847195)
chr7 (189-233)||(44520333-44520377)
[»] chr8 (1 HSPs)
chr8 (189-229)||(11690856-11690896)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 175 - 533
Target Start/End: Original strand, 40314309 - 40314657
Alignment:
Q  175 ttactccaatggttatttatcttatttaattgtaatagattggtcttttatctttatttatttttctcatattggtcctttatctttataatcttgcaca 274  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  40314309 ttacttcaatggttatttatcttatttaattgtaatagattgatcttttatctttattt-ttgttctcatattggtcctttatctttataatcttgcaca 40314407  T
Q  275 agttggtccnnnnnnnncattttctattaaaatctgatgatgtggcaaaccacataggataattttgctannnnnnnatattgaaaatcataaaactcta 374  Q
    |||||||||        |||||||||||||||| |||| |||||||||||||||||| ||||||||||||       |||||||||||||||||||||||    
T  40314408 agttggtccttttttt-cattttctattaaaatttgataatgtggcaaaccacatagtataattttgctatttttttatattgaaaatcataaaactcta 40314506  T
Q  375 aaatcacatgattattcatcttcttcgtctgatcttcatgatctactttcttaaacnnnnnnntaaattcaccaaaatccacctcaaaattacatgaatt 474  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||           
T  40314507 aaatcacatgattattcatcttcttcgtctgatcttcatgatctcctttcttaaacaaaaaaataaattcaccaaaatccacctcaaaattac------- 40314599  T
Q  475 tatgaatttatgtgtattgtttatttccatcttcttctaaactctaaaattaaaatccc 533  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40314600 -atgaatttatgtgtattgtttatttacatcttcttctaaactctaaaattaaaatccc 40314657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 175 - 533
Target Start/End: Complemental strand, 41413229 - 41412881
Alignment:
Q  175 ttactccaatggttatttatcttatttaattgtaatagattggtcttttatctttatttatttttctcatattggtcctttatctttataatcttgcaca 274  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  41413229 ttacttcaatggttatttatcttatttaattgtaatagattgatcttttatctttattt-ttgttctcatattggtcctttatctttataatcttgcaca 41413131  T
Q  275 agttggtccnnnnnnnncattttctattaaaatctgatgatgtggcaaaccacataggataattttgctannnnnnnatattgaaaatcataaaactcta 374  Q
    |||||||||        ||||||||||||||||||||| |||||||||||||||||| ||||||||||||       |||||||||||||||||||||||    
T  41413130 agttggtccttttttt-cattttctattaaaatctgataatgtggcaaaccacatagtataattttgctatttttttatattgaaaatcataaaactcta 41413032  T
Q  375 aaatcacatgattattcatcttcttcgtctgatcttcatgatctactttcttaaacnnnnnnntaaattcaccaaaatccacctcaaaattacatgaatt 474  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||       ||||||||||||||||||||||||||||||           
T  41413031 aaatcacatgattattcatcttcttcgtctgatcttcatgatctccttttttaaacaaaaaaataaattcaccaaaatccacctcaaaattac------- 41412939  T
Q  475 tatgaatttatgtgtattgtttatttccatcttcttctaaactctaaaattaaaatccc 533  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41412938 -atgaatttatgtgtattgtttatttacatcttcttctaaactctaaaattaaaatccc 41412881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 175 - 533
Target Start/End: Original strand, 1828842 - 1829190
Alignment:
Q  175 ttactccaatggttatttatcttatttaattgtaatagattggtcttttatctttatttatttttctcatattggtcctttatctttataatcttgcaca 274  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  1828842 ttacttcaatggttatttatcttatttaattgtaatagattgatcttttatctttattt-ttgttctcatattgatcctttatctttataatcttgcaca 1828940  T
Q  275 agttggtccnnnnnnnncattttctattaaaatctgatgatgtggcaaaccacataggataattttgctannnnnnnatattgaaaatcataaaactcta 374  Q
    |||||||||        |||||||||||||||| |||| |||||||||||||||||| ||||||||||||       |||||||||||||||||||||||    
T  1828941 agttggtccttttttt-cattttctattaaaatttgataatgtggcaaaccacatagtataattttgctatttttttatattgaaaatcataaaactcta 1829039  T
Q  375 aaatcacatgattattcatcttcttcgtctgatcttcatgatctactttcttaaacnnnnnnntaaattcaccaaaatccacctcaaaattacatgaatt 474  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||           
T  1829040 aaatcacatgattattcatcttcttcgtctgatcttcatgatctcctttcttaaacaaaaaaataaattcaccaaaatccacctcaaaattac------- 1829132  T
Q  475 tatgaatttatgtgtattgtttatttccatcttcttctaaactctaaaattaaaatccc 533  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1829133 -atgaatttatgtgtattgtttatttacatcttcttctaaactctaaaattaaaatccc 1829190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 41413406 - 41413312
Alignment:
Q  18 catctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41413406 catctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 41413312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 1828666 - 1828760
Alignment:
Q  18 catctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1828666 catctctcatatttctttgtctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 1828760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 40314131 - 40314225
Alignment:
Q  18 catctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40314131 catctctcatatttctttgtctttctttatttatacatattatctcccttccatatttttattaaatcaccatgtcactcttcaacatcttcatc 40314225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 30625122 - 30625214
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30625122 tctctcatatttctttctctttctttatttatccatattccctttcttccagatttttatcaaatcactatgtcactcttcaacatcttcatc 30625214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 50650351 - 50650259
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||||||||||||||||||| |||||| |||  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  50650351 tctctcatatttctttatctttctttatttatccatattctctttcttccagatttttatcaaatcactatgtcactcttcaacatcttcatc 50650259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 52704466 - 52704385
Alignment:
Q  190 tttatcttatttaattgtaatagattggtcttttatctttatttatttttctcatattggtcctttatctttataatcttgcacaagtt 278  Q
    |||||||||||||||||||||| ||| ||| |||||||||    |||||||||||||   |||||||||||| ||||||||||||||||    
T  52704466 tttatcttatttaattgtaataaattagtcatttatcttt----atttttctcatat---tcctttatctttgtaatcttgcacaagtt 52704385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 55219739 - 55219689
Alignment:
Q  190 tttatcttatttaattgtaatagattggtcttttatctttatttatttttc 240  Q
    ||||||||||||| |||||| |  |||||||||||||||||||| ||||||    
T  55219739 tttatcttatttatttgtaacactttggtcttttatctttatttttttttc 55219689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 3890978 - 3891047
Alignment:
Q  190 tttatcttatttaattgtaatagattggtcttttatctttatttatttttctcatattggtcctttatct 259  Q
    ||||||||||||| |||||| |  |||||| ||||||||||||| |||||  ||| |||||| |||||||    
T  3890978 tttatcttatttatttgtaacactttggtcctttatctttattttttttttccattttggtcttttatct 3891047  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 27293204 - 27293295
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcat 111  Q
    |||||||||||||||| ||||||||||||||| |||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||    
T  27293204 tctctcatatttctttctctttctttatttatccatattctctttcttccatatttttatcaaatcactatgtcactcttcaacatcttcat 27293295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 4919268 - 4919362
Alignment:
Q  18 catctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4919268 catctctcatatttctttctctttctttatttatccatattctctttcttccagatttttatcaaatcactatgtcactcttcaacatcttcatc 4919362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 52385773 - 52385682
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcat 111  Q
    |||||||||||||||| ||||||||||||||| |||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||    
T  52385773 tctctcatatttctttctctttctttatttatccatattctctttcttccatatttttatcaaatcactatgtcactcttcaacatcttcat 52385682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 27286424 - 27286514
Alignment:
Q  22 tctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||| ||||||||||||||| ||||||  ||  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27286424 tctcatatttctttctctttctttatttatccatattccctttcttccaaatttttatcaaatcactatgtcactcttcaacatcttcatc 27286514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 29521072 - 29521028
Alignment:
Q  189 atttatcttatttaattgtaatagattggtcttttatctttattt 233  Q
    |||||||||||||| |||||| |  ||||||||||||||||||||    
T  29521072 atttatcttatttatttgtaacattttggtcttttatctttattt 29521028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 14096510 - 14096604
Alignment:
Q  18 catctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||||| ||||||||||||||| |||||| |||  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  14096510 catctctcatatttctttctctttctttatttatccatattctctttcttccagatttttatcaaatcactatgtcactcttcaacatcttcatc 14096604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 14810100 - 14810034
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatca 86  Q
    |||||| | ||| ||| |||||||||||||||  ||||| |||| ||||||||||||||| ||||||    
T  14810100 tctctcctctttatttttctttctttatttatttatattctctctcttccatatttttattaaatca 14810034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 17690695 - 17690761
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatca 86  Q
    |||||| | ||| ||| ||||||||||||||| |||||| |||| |||||| |||||||| ||||||    
T  17690695 tctctcctctttatttttctttctttatttattcatattctctctcttccagatttttattaaatca 17690761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 37261682 - 37261616
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatca 86  Q
    |||||| | ||| ||| |||||||||||||||  ||||| |||| ||||||||||||||| ||||||    
T  37261682 tctctcctctttatttttctttctttatttatttatattctctctcttccatatttttattaaatca 37261616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 18977078 - 18977037
Alignment:
Q  38 ctttctttatttatacatattatctcccttccatatttttat 79  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  18977078 ctttctttatttatccatattatctctcttccaaatttttat 18977037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 27270237 - 27270161
Alignment:
Q  189 atttatcttatttaattgtaatagattggtcttttatctttatttatttttctcatattggtcctttatctttataa 265  Q
    ||||| ||||||||||||||| | ||| ||| ||||||||| ||| || ||| || || |||||||||| |||||||    
T  27270237 atttaccttatttaattgtaacatattagtcatttatcttttttttttcttcccacataggtcctttatatttataa 27270161  T

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Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 12938900 - 12938992
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12938900 tctctcatatttctttctctttctttatttatccatattccctttcttccagatttttatcaaatcactatgtcactcttcaacatcttcatc 12938992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 27929005 - 27929041
Alignment:
Q  189 atttatcttatttaattgtaatagattggtcttttat 225  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  27929005 atttatcttatttaattgtaatatattggtcatttat 27929041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 19436930 - 19437021
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcat 111  Q
    |||||||||||||||| ||||||||||||||| |||||| |||  |||||| |||||||||||||||| |||||| ||||||||||||||||    
T  19436930 tctctcatatttctttctctttctttatttatccatattctctttcttccagatttttatcaaatcactatgtcattcttcaacatcttcat 19437021  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 29833904 - 29833812
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||| ||||||||||||||| |||||| | |  ||| || |||||||||||||||| ||||||||||||||||||||||||    
T  29833904 tctctcatatttctttctctttctttatttatccatattttatttctttcagatttttatcaaatcactatgtcactcttcaacatcttcatc 29833812  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 29258627 - 29258718
Alignment:
Q  20 tctctcatatttctttatctttctttatttatacatattatctcccttccatatttttatcaaatcaccatgtcactcttcaacatcttcatc 112  Q
    |||||||||||||||| |||||||||||||||||||||| | || |||||| ||||||||  ||||||  |||||||  ||||||||||||||    
T  29258627 tctctcatatttctttctctttctttatttatacatattttatctcttccagatttttat-taatcactgtgtcacttctcaacatcttcatc 29258718  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 7847127 - 7847195
Alignment:
Q  192 tatcttatttaattgtaatagattggtcttttatctttatttatttt-tctcatattggtcctttatct 259  Q
    ||||||||||| |||||||| ||||||||||||||||| ||| |||| |||||| | |||||| |||||    
T  7847127 tatcttatttatttgtaatacattggtcttttatctttcttttttttgtctcatttaggtcctgtatct 7847195  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 44520333 - 44520377
Alignment:
Q  189 atttatcttatttaattgtaatagattggtcttttatctttattt 233  Q
    |||||||||||||| |||||| |  ||||||||||||||||||||    
T  44520333 atttatcttatttatttgtaacattttggtcttttatctttattt 44520377  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 11690856 - 11690896
Alignment:
Q  189 atttatcttatttaattgtaatagattggtcttttatcttt 229  Q
    |||||||||||||| |||||| | |||||||||||||||||    
T  11690856 atttatcttatttatttgtaacatattggtcttttatcttt 11690896  T

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