View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12624_low_8 (Length: 384)
Name: NF12624_low_8
Description: NF12624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12624_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 7100253 - 7100604
Alignment:
| Q |
17 |
atacacacttgaaagatttgtttcacatagatggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatata |
116 |
Q |
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| T |
7100253 |
atacacacttgaaagatttgtttcacatagatggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatataca |
7100352 |
T |
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| Q |
117 |
tgtagagcaatccaaagacaatgataaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcag |
216 |
Q |
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| T |
7100353 |
tgtagagcaatccagagacaatgataaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcag |
7100452 |
T |
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| Q |
217 |
atctccactgtttcaccctaattgaattgtactttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaac |
316 |
Q |
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| T |
7100453 |
atctccactgtttcaccctacttgaattgtactttttgtcatgttcaacaaattcatttgcataagttcccttctgatgcctcacaattgtaggatcaac |
7100552 |
T |
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| Q |
317 |
tttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaaca |
368 |
Q |
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| T |
7100553 |
tttgtagaaaacaggcaataaaatatgtccatctttctccctacactcaaca |
7100604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 156 - 368
Target Start/End: Original strand, 7086780 - 7086992
Alignment:
| Q |
156 |
aaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgt |
255 |
Q |
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| T |
7086780 |
aaaacttacaaaaattgtgatgaatgaaaccctgagatatctgcagatttcttcaaagagcttctccactgtttcaccttgttcaaattgtacttttgtt |
7086879 |
T |
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| Q |
256 |
catgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctc |
355 |
Q |
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| T |
7086880 |
catgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccatctttctc |
7086979 |
T |
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| Q |
356 |
tctacactcaaca |
368 |
Q |
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| T |
7086980 |
tctacactcaaca |
7086992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 241 - 368
Target Start/End: Original strand, 7069799 - 7069926
Alignment:
| Q |
241 |
aattgtactttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaat |
340 |
Q |
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| T |
7069799 |
aattgtacttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaat |
7069898 |
T |
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| Q |
341 |
ctgtccatctttctctctacactcaaca |
368 |
Q |
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| T |
7069899 |
gtttccatctttctctctacagtcaaca |
7069926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 7078231 - 7078306
Alignment:
| Q |
149 |
gtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccac |
224 |
Q |
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| T |
7078231 |
gtaaaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccac |
7078306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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