View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12625_high_3 (Length: 203)
Name: NF12625_high_3
Description: NF12625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12625_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 9889820 - 9889674
Alignment:
| Q |
40 |
aaaaactagacacactccaatggatatttcgtgagaaaagttttagaattattatatggccaaaaacacaacatatggtcacatttattagtactgaccc |
139 |
Q |
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| T |
9889820 |
aaaaacttgacacactccaatggatatttcgtgagaaaagttttagaat-attatatggccaaaaacacaacacctggtcacatttattagtactgaccc |
9889722 |
T |
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| Q |
140 |
gatataatacgtttacatccacctttgacaaagt-aaaacataagtttc |
187 |
Q |
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| T |
9889721 |
catataatacg-ttacatccacctttgacaaagtaaaaacataagtttc |
9889674 |
T |
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