View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12626_low_1 (Length: 460)

Name: NF12626_low_1
Description: NF12626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12626_low_1
NF12626_low_1
[»] chr1 (6 HSPs)
chr1 (1-224)||(438632-438857)
chr1 (1-224)||(408321-408546)
chr1 (8-301)||(400650-400954)
chr1 (8-171)||(426424-426588)
chr1 (248-304)||(15606328-15606384)
chr1 (231-267)||(426660-426696)
[»] scaffold1626 (1 HSPs)
scaffold1626 (1-224)||(1231-1456)
[»] scaffold0312 (1 HSPs)
scaffold0312 (8-171)||(3962-4126)
[»] chr5 (2 HSPs)
chr5 (247-301)||(39994673-39994727)
chr5 (248-301)||(17501073-17501126)
[»] chr4 (2 HSPs)
chr4 (215-300)||(21757915-21758001)
chr4 (248-301)||(13298535-13298588)
[»] chr3 (2 HSPs)
chr3 (248-301)||(50402655-50402708)
chr3 (257-301)||(53855746-53855790)
[»] scaffold0194 (1 HSPs)
scaffold0194 (236-304)||(13779-13848)
[»] chr7 (2 HSPs)
chr7 (248-301)||(15268542-15268595)
chr7 (248-296)||(39417768-39417816)
[»] chr8 (1 HSPs)
chr8 (249-301)||(45371100-45371152)
[»] chr6 (1 HSPs)
chr6 (209-245)||(5576940-5576976)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 438632 - 438857
Alignment:
Q  1 agctacgaccacaaagtaccactgcacttgtgggaacattaaagggagaacaatgatggatattacagtgagcactgcataacctacacatgctaaccat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| ||||||||||||||    
T  438632 agctacgaccacaaagtaccacttcacttgtgggaacattaaagggatcacaatgatggatattatggtgagcactgcatatcctgcacatgctaaccat 438731  T
Q  101 atcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagctgtagtg-agaaatatt 198  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| | ||||||     
T  438732 attggaatgctttcttttataaagaattcatcgcgtgtaagatcgtctagagtctggttctggttattatctgcagctgaagctgtagtgaaaaaatatc 438831  T
Q  199 tatattagattcaatgttgtcaaata 224  Q
    ||||||||||||| ||||||||||||    
T  438832 tatattagattcagtgttgtcaaata 438857  T

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Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 408321 - 408546
Alignment:
Q  1 agctacgaccacaaagtaccactgcacttgtgggaacattaaagggagaacaatgatggatattacagtgagcactgcataacctacacatgctaaccat 100  Q
    |||||| |||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  408321 agctaccaccacaaagtaccacttcacttgggggaagattaaagggataacaatgatggatattacagtgagcactgcataccctacacatgctaaccat 408420  T
Q  101 atcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagctgtagt-gagaaatatt 198  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  | |||| || ||||  | ||||||     
T  408421 atcggaatgctttcttttataaagaattcatcacgtgtaagatcgtctagagtctggttctggttattatctgtgattgaacctctagtaaaaaaatatc 408520  T
Q  199 tatattagattcaatgttgtcaaata 224  Q
    ||||||||||| | | ||||||||||    
T  408521 tatattagatttagttttgtcaaata 408546  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 400650 - 400954
Alignment:
Q  8 accacaaagtaccactgcacttgtgggaacattaaagggagaacaatgatggatattacagtgagcactgcataacctacacatgctaaccatatcggaa 107  Q
    |||||||||||||||| |||||||||||| || | ||||| |||  |||| || ||||| |||||  |  |||| |||||||||||||||||||| || |    
T  400650 accacaaagtaccacttcacttgtgggaatatgagagggataactgtgattgaaattacggtgagtcccacataccctacacatgctaaccatattggga 400749  T
Q  108 tgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagctgtagtg--agaaatatttatatt 204  Q
    |||||||||||| |||||||||||||||||| |||| |||||| ||| |||||||| |||||| || ||  ||| ||||| ||  | |||||| || ||     
T  400750 tgctttcttttacaaagaattcatcgcgtgttagatcgtctagagtccggttctggctattatttgtaaaggaatctgtattggaaaaaatatatacatc 400849  T
Q  205 agattcaatgttgtcaaatagaggc--------gatagtgtagcagaatataacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtc 296  Q
    ||||||| | ||||| ||| | |||         ||||||||||||||||||||||||||| |||||||||| |||| || | ||||||||||| |||||    
T  400850 agattcagtattgtcgaattgtggctatagtgttatagtgtagcagaatataacaaatcaccattgttctgcgatatacaatttagtacaaagtattgtc 400949  T
Q  297 aaata 301  Q
    |||||    
T  400950 aaata 400954  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 426424 - 426588
Alignment:
Q  8 accacaaagtaccactgcacttgtgggaacattaaagggagaacaatgatggatattacagtgagcactgcataacctacacatgctaaccatatcggaa 107  Q
    |||||||||||||||| |||||||||||| ||   ||||| |||  |||| || ||||  |||||  ||  ||| |||||| ||||||||||||| || |    
T  426424 accacaaagtaccacttcacttgtgggaatatgtgagggataactgtgattgaaattatggtgagtcctagataccctacaaatgctaaccatattggga 426523  T
Q  108 tgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatct 171  Q
    |||||||||||| ||| |||||||||||||| |||| |||||| ||| |||||||| ||||||||    
T  426524 tgctttcttttacaaaaaattcatcgcgtgttagatcgtctagagtccggttctggctattatct 426588  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 15606384 - 15606328
Alignment:
Q  248 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaataaca 304  Q
    ||||||||||||||||||||| ||||||  | ||||||||| |||||||||||||||    
T  15606384 aacaaatcactattgttctgctatatgctatttagtacaaaatgttgtcaaataaca 15606328  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 426660 - 426696
Alignment:
Q  231 atagtgtagcagaatataacaaatcactattgttctg 267  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  426660 atagtgtagcagaatataataaatcactgttgttctg 426696  T

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Target: scaffold1626 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold1626
Description:

Target: scaffold1626; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1456 - 1231
Alignment:
Q  1 agctacgaccacaaagtaccactgcacttgtgggaacattaaagggagaacaatgatggatattacagtgagcactgcataacctacacatgctaaccat 100  Q
    |||||| |||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1456 agctaccaccacaaagtaccacttcacttgggggaagattaaagggataacaatgatggatattacagtgagcactgcataccctacacatgctaaccat 1357  T
Q  101 atcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagctgtagt-gagaaatatt 198  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  | |||| || ||||  | ||||||     
T  1356 atcggaatgctttcttttataaagaattcatcacgtgtaagatcgtctagagtctggttctggttattatctgtgattgaacctctagtaaaaaaatatc 1257  T
Q  199 tatattagattcaatgttgtcaaata 224  Q
    ||||||||||| | | ||||||||||    
T  1256 tatattagatttagttttgtcaaata 1231  T

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Target: scaffold0312 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 4126 - 3962
Alignment:
Q  8 accacaaagtaccactgcacttgtgggaacattaaagggagaacaatgatggatattacagtgagcactgcataacctacacatgctaaccatatcggaa 107  Q
    |||||||||||||||| |||||||||||| ||   ||||| |||  |||| || ||||  |||||  ||  ||| |||||| ||||||||||||| || |    
T  4126 accacaaagtaccacttcacttgtgggaatatgtgagggataactgtgattgaaattatggtgagtcctagataccctacaaatgctaaccatattggga 4027  T
Q  108 tgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatct 171  Q
    |||||||||||| ||| |||||||||||||| |||| |||||| ||| |||||||| ||||||||    
T  4026 tgctttcttttacaaaaaattcatcgcgtgttagatcgtctagagtccggttctggctattatct 3962  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 39994673 - 39994727
Alignment:
Q  247 taacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 301  Q
    ||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  39994673 taacaaaccactattgttcaacaatatgcaatatagtacaaagtgttgtcaaata 39994727  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 17501126 - 17501073
Alignment:
Q  248 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 301  Q
    ||||||| ||||||||||||||||| ||  | |||||||||||| |||||||||    
T  17501126 aacaaataactattgttctgcaatacgctgtttagtacaaagtgctgtcaaata 17501073  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 21757915 - 21758001
Alignment:
Q  215 ttgtcaaatagaggcgatagtgtagcagaatataa-caaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaat 300  Q
    |||||||||||| |  ||||||| ||||||| ||| ||||||||||| ||||||||||||||  | |||| |||||||||| |||||    
T  21757915 ttgtcaaatagaagttatagtgtggcagaatttaaacaaatcactatggttctgcaatatgccatttagtgcaaagtgttgccaaat 21758001  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 13298535 - 13298588
Alignment:
Q  248 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 301  Q
    ||||||||||||||||||||  ||||||  | |||||||||||| |||||||||    
T  13298535 aacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaata 13298588  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 50402708 - 50402655
Alignment:
Q  248 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 301  Q
    |||||||||||||||||| |||||||||  | ||||| ||||||||||||||||    
T  50402708 aacaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaata 50402655  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 53855790 - 53855746
Alignment:
Q  257 ctattgttctgcaatatgcactatagtacaaagtgttgtcaaata 301  Q
    |||||||||||||||||||  | ||||||||| ||||||||||||    
T  53855790 ctattgttctgcaatatgctatttagtacaaaatgttgtcaaata 53855746  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 13779 - 13848
Alignment:
Q  236 gtagcagaatat-aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaataaca 304  Q
    |||||||||| | |||||||| |||||||||  ||||||||  | ||||||| |||||||||||||||||    
T  13779 gtagcagaatttgaacaaatctctattgttccacaatatgccgtttagtacatagtgttgtcaaataaca 13848  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 15268542 - 15268595
Alignment:
Q  248 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 301  Q
    ||||||| ||||||||||||||||| ||  | |||||||||||| |||||||||    
T  15268542 aacaaataactattgttctgcaatacgctgtttagtacaaagtgctgtcaaata 15268595  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 39417768 - 39417816
Alignment:
Q  248 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtc 296  Q
    |||||||||||||||||| || ||||||  ||||||||||| |||||||    
T  39417768 aacaaatcactattgttccgcgatatgctatatagtacaaaatgttgtc 39417816  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 45371152 - 45371100
Alignment:
Q  249 acaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 301  Q
    ||||| ||||||||||| |||||||||  | ||||||||| ||||||||||||    
T  45371152 acaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaata 45371100  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 5576976 - 5576940
Alignment:
Q  209 tcaatgttgtcaaatagaggcgatagtgtagcagaat 245  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  5576976 tcaatgttgtcaaatggaggctatagtgtagcagaat 5576940  T

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