View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12626_low_10 (Length: 227)
Name: NF12626_low_10
Description: NF12626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12626_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 3234640 - 3234443
Alignment:
| Q |
11 |
agcagagaacagtgctttgttcaaattccgctacactacaatgttatagtgccactgttagacaaaacattgtactaaatagtgtattccgctccgctgc |
110 |
Q |
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| T |
3234640 |
agcagaaaacagtgctttgttcaaattccgctacactacaatgttatagtgccactgttagacaaaatattgtactaaatagtgtattccgctccgctgc |
3234541 |
T |
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| Q |
111 |
aatgttatagtgccgctattagacaacacttttttgctaaagtgannnnnnnnaactcgatatccagtccagggaccaaacccgccgtccattaatgg |
208 |
Q |
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| T |
3234540 |
aatgttatagtgccgctattagacaacacttttttgctaaagtgattttttttaactcgatatccagtccagggaccaattccgccgtccattaatgg |
3234443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 38921369 - 38921328
Alignment:
| Q |
27 |
ttgttcaaattccgctacactacaatgttatagtgccactgt |
68 |
Q |
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| T |
38921369 |
ttgttcaaattccgctacacaacaatgctatagcgccactgt |
38921328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 24011887 - 24011920
Alignment:
| Q |
26 |
tttgttcaaattccgctacactacaatgttatag |
59 |
Q |
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| T |
24011887 |
tttgttcaaattccgctacacaacaatgttatag |
24011920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 17505037 - 17505001
Alignment:
| Q |
26 |
tttgttcaaattccgctacactacaatgttatagtgc |
62 |
Q |
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| T |
17505037 |
tttgttcaaattccgctacacaacagtgttatagtgc |
17505001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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