View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12626_low_2 (Length: 443)

Name: NF12626_low_2
Description: NF12626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12626_low_2
NF12626_low_2
[»] chr2 (19 HSPs)
chr2 (54-429)||(10469253-10469632)
chr2 (19-431)||(10514094-10514502)
chr2 (78-359)||(10541000-10541288)
chr2 (92-431)||(10459385-10459726)
chr2 (19-195)||(7464601-7464777)
chr2 (150-431)||(10485329-10485614)
chr2 (19-195)||(10856272-10856449)
chr2 (177-359)||(10503264-10503455)
chr2 (19-168)||(10503080-10503220)
chr2 (178-359)||(7464393-7464583)
chr2 (19-89)||(10459186-10459256)
chr2 (19-230)||(10845934-10846152)
chr2 (372-430)||(10846321-10846379)
chr2 (149-190)||(27964707-27964748)
chr2 (384-431)||(10541312-10541359)
chr2 (255-301)||(9081700-9081746)
chr2 (372-430)||(28107181-28107239)
chr2 (377-430)||(27964925-27964978)
chr2 (19-59)||(10894254-10894294)
[»] chr1 (3 HSPs)
chr1 (19-309)||(24049582-24049880)
chr1 (145-194)||(18489034-18489083)
chr1 (372-430)||(18489275-18489333)
[»] chr4 (2 HSPs)
chr4 (137-190)||(17733550-17733604)
chr4 (372-430)||(17733797-17733855)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 54 - 429
Target Start/End: Original strand, 10469253 - 10469632
Alignment:
Q  54 tagatatttctctgtagagtaagtttcttgaacaaaagagtcaacattgctagtaggaagtatcaagtaagaatttgaatatgtgcactgtttagagact 153  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  10469253 tagatatttctttgtagaataagtttcttgaa-aaaagagtcaatattgctagtaggaagtatcaattaagaaattgaatatatgcactgtttagagact 10469351  T
Q  154 tgaatccatggactagtaagaaatggataatctgagggtaaacaatattaagagatcccatcatttggtatatcttttttattccttcttcctaag--aa 251  Q
    ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| || ||||  |     
T  10469352 tgaatccatggactagtaagaaatggataatgtgagggtaaatagtattaagagatcctatcatttggtatatcttttttattccttcatcgtaagatag 10469451  T
Q  252 aact----tacaataactataattgtagattatcataaatgtcatcttgaattgggtcatatatctataaataatgaactaattgagttgtaaaaaaccg 347  Q
    ||||    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||   |||||| ||||||||     
T  10469452 aacttaaatacaataactataattgtagattatcaaaaatgtcatcttgaattgagtcatatatctataaaaaatgaactacccgagttgcaaaaaacca 10469551  T
Q  348 agattgtagcaacnnnnnnnnngtagatccacaacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtg 429  Q
    ||||||||||||          |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10469552 agattgtagcaa-aaaataaaagtagatccacaacacaaaacaccatgcgcacaagaccaatgctatcaaagtagaacagtg 10469632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 10514094 - 10514502
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagatatttctctgtagagtaagtttcttgaacaaaagagtcaacattgctagtaggaagtatca 118  Q
    |||||||||||  |||||||||||||||||||||||||||| |||||  |||   ||||||||||||  ||| |||||| ||||| || ||    |||||    
T  10514094 atatgcaagagggtaatattagaagtatggttaaatagatacttctcgctaggaaaagtttcttgaa--aaatagtcaatattgccagcag----tatca 10514187  T
Q  119 agtaagaatttgaatatgtgcactgtttagagacttgaatccatggactagtaagaaatggataatctgagggtaaa-caatattaagagatcccatca- 216  Q
    || ||||| ||||||   ||||||||| |||||||||||||||||||||||||| |||||||||||||||||  |||  |||||||| |||||||||||     
T  10514188 agcaagaaattgaatccatgcactgtt-agagacttgaatccatggactagtaataaatggataatctgaggacaaattaatattaaaagatcccatcat 10514286  T
Q  217 -tttggtatatcttttttattccttcttcctaagaaa------acttacaataactataattgtagattatcataaatgtcatcttgaattgggtcatat 309  Q
     |||||||||||||| |||| | |||||   |||| |      | |||||   |||| |||||||| ||||||||||||||||||||||||| ||| |||    
T  10514287 ttttggtatatctttgttatgcattcttagcaagacagaacttaattacacctactacaattgtaggttatcataaatgtcatcttgaattgagtcgtat 10514386  T
Q  310 atctataaataatgaactaattgagttgtaaaaaaccgagattgtagcaacnnnnnnnnngtagatccacaacacaaaacaccatgtgcacaagaccaat 409  Q
    || |||||| ||||||||||||||||   |||||||  ||||||||| |||         | |||||||||||||||||||||||||||||||||| |||    
T  10514387 atttataaaaaatgaactaattgagtaacaaaaaacaaagattgtagaaac------aaagcagatccacaacacaaaacaccatgtgcacaagacaaat 10514480  T
Q  410 gctatcaaagtagaacagtgaa 431  Q
    || |||||||||||||| ||||    
T  10514481 gcaatcaaagtagaacaatgaa 10514502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 78 - 359
Target Start/End: Original strand, 10541000 - 10541288
Alignment:
Q  78 ttcttgaacaaaagagtcaacattgctagtaggaagtatcaagtaagaatttgaatatgtgcactgtttagagacttgaatccatggactagtaagaaat 177  Q
    ||||| || |||| |||||| ||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  10541000 ttcttcaaaaaaatagtcaatattgctagtaggaagtagcaagaaagaatttgaatacatgcactgtttagagacttgaatccatgaactagtaagaaat 10541099  T
Q  178 ggataatctgagggtaaa-caatattaagagatcccatcatttggtatatcttttttattccttcttcctaagaaa------acttacaataactataat 270  Q
    | ||||||||||||||||  |||||||| |||| ||||||||| |||||||||| |||||| |||| ||  ||| |      | |||||| |||||| ||    
T  10541100 gcataatctgagggtaaatgaatattaaaagatgccatcatttcgtatatctttgttattcattctcccgtagacagaatttaattacaacaactatgat 10541199  T
Q  271 tgtagattatcataaatgtcatcttgaattgggtcatatatctataaataatgaactaattgagttgtaaaaaaccgagattgtagcaa 359  Q
    |||| || ||||||||||  || |||||||| |||||| || || ||| ||||||||||||  ||   |||||||| ||||||||||||    
T  10541200 tgtatatgatcataaatgcaattttgaattgagtcatacatttaaaaaaaatgaactaattacgtaacaaaaaaccaagattgtagcaa 10541288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 92 - 431
Target Start/End: Original strand, 10459385 - 10459726
Alignment:
Q  92 agtcaacattgctagtaggaagtatcaagtaagaatttgaatatgtgcactgt-ttagagacttgaatccatg----gactagtaagaaatggataatct 186  Q
    |||||| |||||||||||||||||||||||||||||||||||   | |||||| |||||||| ||||||||||    ||||||||||||||||||| |||    
T  10459385 agtcaatattgctagtaggaagtatcaagtaagaatttgaatccattcactgtgttagagacatgaatccatggactgactagtaagaaatggatagtct 10459484  T
Q  187 gagggtaaa-caatattaagagatcccatcatttggtatatcttttttattccttcttcctaagaaa------acttacaataactataattgtagatta 279  Q
    |||||||||  |||||||| |||||||||||||||| ||||| || | |||| |||||||||||| |      | |||||  |||||||||||| | |||    
T  10459485 gagggtaaattaatattaaaagatcccatcatttggcatatccttgtgattcgttcttcctaagacagaccttagttacaccaactataattgtgggtta 10459584  T
Q  280 tcataaatgtcatcttgaattgggtcatatatctataaataatgaactaattgagttgtaaaaaaccgagattgtagcaacnnnnnnnnngtagatccac 379  Q
    |||||||||||||||||||||| |||||||||          |||||||||  |||   | |||||| ||| ||||||||          | ||||||||    
T  10459585 tcataaatgtcatcttgaattgagtcatatat---------gtgaactaatcaagtaacagaaaaccaagagtgtagcaa-aaaagaaaagcagatccac 10459674  T
Q  380 aacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtgaa 431  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10459675 aacacaaaacaccatgtgcacaagaccaatgcaatcaaagtagaacagtgaa 10459726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 7464777 - 7464601
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagatatttctctgtagagtaagtttcttgaacaaaagagtcaacattgctagtaggaagtatca 118  Q
    |||||||| || ||||||||| | |||| |||||||||| | || || ||||   |||||||||||| |||| |||||||||||||||| ||||||||||    
T  7464777 atatgcaacaggataatattaaatgtatagttaaatagaaacttttcagtaggacaagtttcttgaa-aaaatagtcaacattgctagtgggaagtatca 7464679  T
Q  119 agtaagaatttgaatatgtgcactgt-ttagagacttgaatccatggactagtaagaaatggataatctgagggtaaa 195  Q
    || ||||||||||||   |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7464678 agcaagaatttgaatccatgcactgtgttagagacttgaatccatggactagtcagaaatggataatctgagggtaaa 7464601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 150 - 431
Target Start/End: Original strand, 10485329 - 10485614
Alignment:
Q  150 gacttgaatccatggactagtaagaaatggataatctgagggtaaacaatattaagagatcccatcatttggtatatcttttttattccttcttcctaag 249  Q
    ||||||||| |||||| |||| | |||||||||||||||||  ||  | |||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  10485329 gacttgaattcatggaatagtcaaaaatggataatctgaggtaaattactattaaaagatcccatcatttggtatatctttgttattcattcttcctaag 10485428  T
Q  250 aaa------acttacaataactataattgtagattatcataaatgtcatcttgaattgggtcatatatctataaataatgaactaattgagttgtaaaaa 343  Q
    | |      | |||||| |||||||||||||| ||||||| ||||||||||| ||||| | |||| || |||||| ||||||||||||||||   | |||    
T  10485429 acagaacttaattacaacaactataattgtaggttatcatgaatgtcatcttaaattgagccata-atttataaaaaatgaactaattgagtaacagaaa 10485527  T
Q  344 accgagattgtagcaacnnnnnnnnngtagatccacaacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtgaa 431  Q
    ||| ||||||||| ||          | ||||| |||||| |||||||||||||||||| |||||||| || ||||||||| ||||||    
T  10485528 accaagattgtagtaa-aaaagaaaagcagatctacaacataaaacaccatgtgcacaaaaccaatgcaatgaaagtagaatagtgaa 10485614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 10856272 - 10856449
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagatatttctctgtagagtaagtttcttgaacaaaagagtcaacattgctagtaggaagtatca 118  Q
    ||||||||||  |||| |||||||||| |||| |||||||| || ||||| |  ||||||||||||| |||| ||||||  ||||| |||||||||| ||    
T  10856272 atatgcaagacgataacattagaagtacggttgaatagatacttttctgtgggataagtttcttgaaaaaaatagtcaatgttgctggtaggaagtagca 10856371  T
Q  119 agtaagaatttgaatatgtgcactgt-ttagagacttgaatccatggactagtaagaaatggataatctgagggtaaa 195  Q
    |||| ||||||||||     |||||| |||||||||||||| |||| |||||||||||||||||||| ||| ||||||    
T  10856372 agtatgaatttgaatccactcactgtgttagagacttgaattcatgaactagtaagaaatggataatttgatggtaaa 10856449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 177 - 359
Target Start/End: Original strand, 10503264 - 10503455
Alignment:
Q  177 tggataatctgagggtaaacaa-tattaagagatcccatcatttggtatatcttttttattccttcttcctaagaaa------acttacaataactataa 269  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||||||| || ||| ||||||| |||| |      | |||||| ||||| ||    
T  10503264 tggataatctgaggttaaataaatattaagagatcccatcatttggtatatctttgttcttcattcttccaaagacagaacttaattacaacaactaaaa 10503363  T
Q  270 ttgtagattatcataaatgtcatcttgaattgggtcatata--tctataaataatgaactaattgagttgtaaaaaaccgagattgtagcaa 359  Q
    |||| | |||| |||||||||||| ||||||  ||||||||  | || ||| ||||||||||||||||   |||||||| |||| |||||||    
T  10503364 ttgtcggttattataaatgtcatcatgaatttagtcatatacttataaaaaaaatgaactaattgagtaacaaaaaaccaagatcgtagcaa 10503455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 10503080 - 10503220
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagatatttctctgtagagtaagtttcttgaacaaaagagtcaacattgctagtaggaagtatca 118  Q
    ||||||||||| ||||||||||| |||| |||||||||| | ||||          ||||||||||| |||| |||||| |||||||||  |||||||||    
T  10503080 atatgcaagaggataatattagacgtatagttaaatagaaacttct----------agtttcttgaaaaaaatagtcaatattgctagtgtgaagtatca 10503169  T
Q  119 agtaagaatttgaatatgtgcactgt-ttagagacttgaatccatggacta 168  Q
     ||||||||||||||   |||||||| ||||||||||||||||||||||||    
T  10503170 ggtaagaatttgaatccatgcactgtgttagagacttgaatccatggacta 10503220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 359
Target Start/End: Complemental strand, 7464583 - 7464393
Alignment:
Q  178 ggataatctgagggtaaac-aatattaagagatcccatcatttggtatatcttttttattccttcttcctaag--aaaactta----caataactataat 270  Q
    ||||||||||||| ||||  ||||  |||||||||||||||||||||||||||| |||||  ||||||| |||  | ||||||    ||| | |||||||    
T  7464583 ggataatctgaggttaaattaataccaagagatcccatcatttggtatatctttgttatttattcttccaaaggcagaacttaattacaacagctataat 7464484  T
Q  271 tgtagattatcataaatgtcatcttgaattgggtcatatatctataaataa--tgaactaattgagttgtaaaaaaccgagattgtagcaa 359  Q
    ||||| |||| ||||||||| || ||||||  ||||||||  |||||| ||  ||||||||||||||  ||||||||  ||||||||||||    
T  7464483 tgtaggttattataaatgtcttcatgaattcagtcatatacttataaaaaaaatgaactaattgagtaataaaaaactaagattgtagcaa 7464393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 10459186 - 10459256
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagatatttctctgtagagtaagtttcttgaacaaa 89  Q
    ||||||||||| || |||||||||||||||||||||||| | ||||||||||  |||||||||||||||||    
T  10459186 atatgcaagaggatgatattagaagtatggttaaatagaaacttctctgtaggataagtttcttgaacaaa 10459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 10845934 - 10846152
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagatatttctctgtagagtaagtttcttgaacaaaagagtcaacattgct---agtaggaagta 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| |||  |||| |||||||| |||  |||| | ||||||    ||||||||||    
T  10845934 atatgcaagaggataatattagaagtatggttaaatagatatttttctataggataag-ttcttgaa-aaattagtcgatattgctgcatgtaggaagta 10846031  T
Q  116 tcaagtaagaatttgaat--atgtgcactgt---ttagagacttgaatccatggactagtaagaaatggataatctgagggtaaa-caatattaagagat 209  Q
     ||||||| | |||||||  |   ||||| |   | |||||| ||||||| ||||||| |||||||| || ||||||||||||||  |||||| | ||||    
T  10846032 gcaagtaaaagtttgaatccaatcgcactttgtgtcagagacctgaatccgtggactactaagaaattgacaatctgagggtaaattaatattgaaagat 10846131  T
Q  210 cccatcatttggtatatcttt 230  Q
    ||||| |||| ||||||||||    
T  10846132 cccataattttgtatatcttt 10846152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 10846321 - 10846379
Alignment:
Q  372 agatccacaacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtga 430  Q
    ||||||||| | |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  10846321 agatccacagcgcaaaacaccatgtgcacaagactaatgcaatcaaactagaacagtga 10846379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 27964707 - 27964748
Alignment:
Q  149 agacttgaatccatggactagtaagaaatggataatctgagg 190  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27964707 agacttgaatccatggactagtaagaaatagataatctgagg 27964748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 10541312 - 10541359
Alignment:
Q  384 caaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtgaa 431  Q
    |||||||| ||||||||||||||||||| || |||||| |||||||||    
T  10541312 caaaacacaatgtgcacaagaccaatgcaataaaagtataacagtgaa 10541359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 9081746 - 9081700
Alignment:
Q  255 ttacaataactataattgtagattatcataaatgtcatcttgaattg 301  Q
    |||||| ||||| |||||||||||||||||||||  |||||||||||    
T  9081746 ttacaacaactacaattgtagattatcataaatgcaatcttgaattg 9081700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 28107239 - 28107181
Alignment:
Q  372 agatccacaacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtga 430  Q
    |||| |||||| ||||||||||||||||||||||||| || || |||  ||||||||||    
T  28107239 agattcacaacgcaaaacaccatgtgcacaagaccaacgcaattaaacgagaacagtga 28107181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 27964925 - 27964978
Alignment:
Q  377 cacaacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtga 430  Q
    |||||| ||||||||||||||||||||||||| || || |||  ||||||||||    
T  27964925 cacaacgcaaaacaccatgtgcacaagaccaacgcaattaaacgagaacagtga 27964978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10894294 - 10894254
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagata 59  Q
    |||||||||||||||| |||||||| ||||||| |||||||    
T  10894294 atatgcaagagaataacattagaagcatggttagatagata 10894254  T

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Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 24049880 - 24049582
Alignment:
Q  19 atatgcaagagaataatattagaagtatggttaaatagatatttctctgtagagtaagtttcttgaacaaaag-agtcaacattgctagtaggaagtatc 117  Q
    |||||||| || |||| |||| | ||||||||||||||| | |||| |||||   |||||||||||| ||||  ||| || |||||||||||||||||||    
T  24049880 atatgcaatagtataacattacatgtatggttaaatagaaaattctatgtaggacaagtttcttgaaaaaaaatagtgaatattgctagtaggaagtatc 24049781  T
Q  118 aagtaagaatttgaatatgtgcactgt-ttagagacttgaatccatggactagtaagaaatggataatctgagggtaa-acaatattaagagatcccatc 215  Q
    ||||||||||| ||||   |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||   ||| |||  ||||||||||    
T  24049780 aagtaagaattcgaatccatgcactgtgttagagacttgaatccatggactagtcagaaatggataatatgagggtaagttaatgttagaagatcccatc 24049681  T
Q  216 atttggtatatcttttttattccttcttc-----ctaagaaaacttacaataactataattgtagattatcataaatgtcatcttgaattgggtcatat 309  Q
    |||| |||||||||  |||||| ||||||     | |||   | ||||||  |  ||||||||||  |||||||||||||||||||||||| |||||||    
T  24049680 attttgtatatcttcgttattcgttcttctaaaacaaagtttaattacaagtataataattgtaggctatcataaatgtcatcttgaattgagtcatat 24049582  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 18489034 - 18489083
Alignment:
Q  145 ttagagacttgaatccatggactagtaagaaatggataatctgagggtaa 194  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  18489034 ttagagacttggatccatggactagtaagaagtggataatttgagggtaa 18489083  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 18489275 - 18489333
Alignment:
Q  372 agatccacaacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtga 430  Q
    ||||||||||| |||||||| ||||||| ||||||| ||| |||||| |||||| ||||    
T  18489275 agatccacaacgcaaaacacgatgtgcataagaccactgcaatcaaactagaacggtga 18489333  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 17733550 - 17733604
Alignment:
Q  137 tgcactgt-ttagagacttgaatccatggactagtaagaaatggataatctgagg 190  Q
    |||||||| ||||||||||  ||||||||||||||||||| |||||||| |||||    
T  17733550 tgcactgtgttagagactttgatccatggactagtaagaagtggataatttgagg 17733604  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 17733797 - 17733855
Alignment:
Q  372 agatccacaacacaaaacaccatgtgcacaagaccaatgctatcaaagtagaacagtga 430  Q
    ||||||||||| |||||||| || |||| ||||||| ||| |||||| |||||||||||    
T  17733797 agatccacaacgcaaaacacgatatgcataagaccactgcaatcaaactagaacagtga 17733855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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