View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12626_low_3 (Length: 397)
Name: NF12626_low_3
Description: NF12626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12626_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 469501 - 469139
Alignment:
| Q |
19 |
ttaatatgtattagtatcagacagataacgtgtctagacacgcatgagtggaactgagagttagaagcgattgaatgtaattatatatgtcggtagtaat |
118 |
Q |
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| T |
469501 |
ttaatatgtattagtatcagacagataacgtgtttagacacgcatgagtggaactgagagttagaagcgattgaatgtaattatatatgtccgtagtaat |
469402 |
T |
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| Q |
119 |
ttgagaaaatggaagttataattagaaacgactgagtgtaatcatatgcgtcacatatcatatggcatgtatgagacatgtcttcaatatgaagtctcaa |
218 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
469401 |
ttgagaaaatggaagttatagttagaaacgattgagtgtaatcatatgtgtcacatatcatatggcatgtatgagacatgtcttcaatatgaagtctcaa |
469302 |
T |
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| Q |
219 |
tactacatatcatatgaccannnnnnnnnnnnnnnnnnnnnnnnagctaacaactttatccattcacccttcgtagaatgctttagcatttaatcaatca |
318 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
469301 |
tactacatatcatatgaacattttttgattttattttgaattttagctaacaactttatccattcacccttcgtagaatgctttagcatctaatcaatca |
469202 |
T |
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| Q |
319 |
aatgtatcatagagtaatgacatagaatcataggaacgatctctttaacactctttttgacac |
381 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |
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| T |
469201 |
aatgtatcatagagtaatgacataggatcataggaacaatcactttaacactctttttgacac |
469139 |
T |
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