View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12626_low_4 (Length: 332)
Name: NF12626_low_4
Description: NF12626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12626_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 28102327 - 28102039
Alignment:
| Q |
1 |
tgtggtgatgagggtggtggaccttgtggagcctgcaagtttttgagaagaaagtgtgtgaaaggttgttgcatatttgcaccatattttgagtcatcag |
100 |
Q |
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| T |
28102327 |
tgtggtgatgagggtggtggaccttgtggagcctgcaagtttttgaggagaaagtgtgtgaaaggttgttgcatatttgcaccatattttgagtcatcag |
28102228 |
T |
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| Q |
101 |
gtcaaggaagtgctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttcataagcgtcttgatgc |
200 |
Q |
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| T |
28102227 |
gtcaaggaagtgctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttcataagcgtcttgatgc |
28102128 |
T |
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| Q |
201 |
tgttgttactctttgctatgaggctcttgctagggctactgaccctgtttatggttgtgttgctcacctctttgctcttcaacaacagg |
289 |
Q |
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| T |
28102127 |
tgttgttactctttgctatgaggctcttgctagggctactgaccctgtttatggttgtgttgctcacctctttgctcttcaacaacagg |
28102039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 13286781 - 13287051
Alignment:
| Q |
13 |
ggtggtggaccttgtggagcctgcaagtttttgagaagaaagtgtgtgaaaggttgttgcatatttgcaccatattttgagtcatcaggtcaaggaagtg |
112 |
Q |
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|||||||| |||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||| | ||||||| | |
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| T |
13286781 |
ggtggtgggccttgtggtgcttgcaagtttttgaggagaaagtgtgtaaaaggttg---catatttgcaccatattttgattca---gaccaaggaacgg |
13286874 |
T |
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| Q |
113 |
ctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttcataagcgtcttgatgctgttgttactct |
212 |
Q |
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| T |
13286875 |
ttcattttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactct |
13286974 |
T |
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| Q |
213 |
ttgctatgaggctcttgctagggctactgaccctgtttatggttgtgttgctcacctctttgctcttcaacaacagg |
289 |
Q |
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| T |
13286975 |
ttgctatgaagctcttgctagggctagagaccctgtttatggttgtgttgctcacatctttgcacttcaacaacagg |
13287051 |
T |
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