View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12627_high_2 (Length: 610)
Name: NF12627_high_2
Description: NF12627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12627_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 20 - 591
Target Start/End: Original strand, 4440726 - 4441298
Alignment:
| Q |
20 |
ttctactggcggtgtgcaatcagctagtgattagatgaggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttgtata |
119 |
Q |
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| T |
4440726 |
ttctactggcggtgtgcaatcagctagtgattagatgaggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttgtata |
4440825 |
T |
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| Q |
120 |
tgctaactgtagagcttaaggtctcatgtgttttagatagctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgcaaacatatgtg |
219 |
Q |
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| T |
4440826 |
tgctaactgtagagcttaaggtctcatgtgttttagatagctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgtaaacatatgtg |
4440925 |
T |
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| Q |
220 |
atgtatttcccaatctagttaagcaaatgctgacacggtgcat--gacatagggctacctgaaaatcaatcatagaatcttggttagatgaaatcagagc |
317 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440926 |
atgtattttccaatctagttaagcaaatgctgacacggtgcatatgacatagggctacctgaaaatcaatcatagaatcttggttagatgaaatcagagc |
4441025 |
T |
|
| Q |
318 |
gtgctaaaaatcactccgtgatttctttgtatagtcaacaccatcgaatcagagaaaaactgtagttgtagatatgtggagagcagaggttctgtcgtag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441026 |
ttgctaaaaatcactccgtgatttctttgtatagtcaacaccatcgaagcagagaaaaactgtagttgtagatatgtggagagcagaggttctgtcgtag |
4441125 |
T |
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| Q |
418 |
caaaggttaggacttcagtggatacttcttcattgatatccatcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacactt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441126 |
caaaggttaggacttcagtggatacttcttcattgatatccatcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacactt |
4441225 |
T |
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| Q |
518 |
acacacgccctgtcaaccttgataatactttgcaaatatgtaagcaattgaatgtaaccaaatatgttagtgtc |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4441226 |
acacacgccctgtcaaccttgataatactttgcaaatatgtaagcaattgaatgtaacc-aatatgttagtgtc |
4441298 |
T |
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