View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12627_high_3 (Length: 555)
Name: NF12627_high_3
Description: NF12627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12627_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 46597474 - 46597205
Alignment:
| Q |
1 |
ttctgtagatatccatttatcaatcaaagggcgaaggcggttagccagcaccttagaaataattttgtataggatattaaagagggagatagggcgaagg |
100 |
Q |
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| T |
46597474 |
ttctgtagatatccatttatcaatcaaagggcgaaggcggttagccagcaccttagaaataattttatataggacattacagagggagatagggcgaagg |
46597375 |
T |
|
| Q |
101 |
tctttcatatattccgggtaatcatcctttggagcgagcacgatgtgtgtggcattcaactcagggggaaaggaactagaagtgagccaagaggaagcaa |
200 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46597374 |
tctttcatatattccgggttatcaccctttggagcgagcacgatgtgtgtggcattcaactcagggggaaaggaaccagaagtgagccaagaggaagcaa |
46597275 |
T |
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| Q |
201 |
cataaaatatttctccacctaattccttccaaaaacggtggtaaaaagcaggattcagaccatccggtcc |
270 |
Q |
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| T |
46597274 |
caaaaaatatttctccacctaattccttccaaaaacggtggtaaaaagcagaattcagaccatccggtcc |
46597205 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 16860678 - 16860599
Alignment:
| Q |
239 |
tggtaaaaagcaggattcagaccatccggtccgggggatttatcaggatgcatattaaatattgcttcatgaaattcttg |
318 |
Q |
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| T |
16860678 |
tggtaaaatgctggatttagaccatccggacccggagatttatccggatgcatactaaaaattgcctctttaaattcttg |
16860599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 9183363 - 9183428
Alignment:
| Q |
227 |
ttccaaaaacggtggtaaaaagcaggattcagaccatccggtccgggggatttatcaggatgcata |
292 |
Q |
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||||| || |||||| ||||||||||||| ||||| || ||||| || |||||||| ||||||||| |
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| T |
9183363 |
ttccagaatcggtggaaaaaagcaggattaagaccgtcaggtccaggtgatttatctggatgcata |
9183428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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