View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12627_low_4 (Length: 461)

Name: NF12627_low_4
Description: NF12627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12627_low_4
NF12627_low_4
[»] chr4 (6 HSPs)
chr4 (101-358)||(31883986-31884243)
chr4 (361-419)||(55986309-55986367)
chr4 (358-419)||(40168636-40168697)
chr4 (362-419)||(40169779-40169836)
chr4 (364-419)||(55984768-55984823)
chr4 (361-417)||(48157680-48157736)
[»] chr6 (7 HSPs)
chr6 (357-419)||(6977023-6977085)
chr6 (359-447)||(16859334-16859422)
chr6 (359-419)||(20409065-20409125)
chr6 (361-419)||(6978137-6978195)
chr6 (360-419)||(16864492-16864551)
chr6 (360-419)||(20410217-20410276)
chr6 (359-415)||(2853676-2853732)
[»] chr7 (1 HSPs)
chr7 (359-447)||(12961982-12962070)
[»] chr8 (4 HSPs)
chr8 (360-419)||(23039123-23039182)
chr8 (359-447)||(23039499-23039587)
chr8 (359-419)||(38612217-38612277)
chr8 (359-419)||(38613417-38613477)
[»] chr3 (7 HSPs)
chr3 (358-419)||(54539106-54539167)
chr3 (358-447)||(54539470-54539559)
chr3 (364-419)||(48053129-48053184)
chr3 (361-397)||(48060802-48060838)
chr3 (359-417)||(11413441-11413499)
chr3 (349-417)||(5001188-5001256)
chr3 (351-391)||(25154465-25154505)
[»] chr2 (6 HSPs)
chr2 (359-419)||(45413477-45413537)
chr2 (361-419)||(1389233-1389291)
chr2 (360-419)||(45412334-45412393)
chr2 (360-419)||(1394854-1394913)
chr2 (361-419)||(28851672-28851730)
chr2 (364-419)||(28847336-28847391)
[»] chr5 (7 HSPs)
chr5 (360-417)||(8061855-8061912)
chr5 (359-417)||(8067452-8067510)
chr5 (361-413)||(17415695-17415747)
chr5 (361-419)||(17414544-17414602)
chr5 (359-417)||(24242015-24242073)
chr5 (359-417)||(14190489-14190547)
chr5 (361-417)||(14189664-14189720)
[»] chr1 (2 HSPs)
chr1 (358-419)||(46313274-46313335)
chr1 (359-417)||(50379974-50380032)
[»] scaffold1458 (1 HSPs)
scaffold1458 (356-417)||(1466-1527)
[»] scaffold0515 (1 HSPs)
scaffold0515 (356-417)||(3634-3695)
[»] scaffold0306 (1 HSPs)
scaffold0306 (356-417)||(3634-3695)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 101 - 358
Target Start/End: Complemental strand, 31884243 - 31883986
Alignment:
Q  101 ggatttttcacataagcatttaagtgacgaagaagagaattatgatcaactcttgaagagtgttaagagtgatattaacaaaggtttaagtttaaagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31884243 ggatttttcacataagcatttaagtgacgaagaagagaattatgatcaactcttgaagagtgttaagagcgatattaacaaaggtttaagtttaaagttt 31884144  T
Q  201 agttaaaaactacatcacagcgtaaaattattagcataaaattttaggatttaaaacaggcatatcacagcctagtgctaaacaaacagttaattcaaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  31884143 agttaaaaactacatcacagcgtaaaattattagcataaaattttaggatttaaaacaggcatatcaaggcctagtgctaaacaaacagttaattcaaac 31884044  T
Q  301 ttctccgaactcttacaatatagatagcaaaataacttagaatggcaataataacaaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31884043 ttctccgaactcttacaatatagatagcaaaataacttagaatggcaataataacaaa 31883986  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 55986367 - 55986309
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  55986367 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttgaccccctatt 55986309  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 40168636 - 40168697
Alignment:
Q  358 ataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  40168636 ataggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggccccctatt 40168697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 40169836 - 40169779
Alignment:
Q  362 gctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 40169779  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 55984768 - 55984823
Alignment:
Q  364 taaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||| |||| ||||    
T  55984768 taaactgcagttttaaccccctaactttcacaatggtgcgattttgaccccttatt 55984823  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 48157736 - 48157680
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||| ||||||||| ||||||||||||||| ||  |||| ||||||||||||||    
T  48157736 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggcccccta 48157680  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 6977023 - 6977085
Alignment:
Q  357 aataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6977023 aataggctaaactgcagttttaaccccctaactttcacaatggtgcaattttggccccctatt 6977085  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 447
Target Start/End: Original strand, 16859334 - 16859422
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctattnnnnnnnnttaaattttaaacccctatg 447  Q
    ||||||||| |||| |||||||||||||||||||||||| |||| |||||| |||||||||        ||||||||||||||||||||    
T  16859334 taggctaaactgcaattttaaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaattaaattttaaacccctatg 16859422  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 20409065 - 20409125
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  20409065 taggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 20409125  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 6978195 - 6978137
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  6978195 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggctccctatt 6978137  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 16864551 - 16864492
Alignment:
Q  360 aggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||| ||||||||||||||||||||||| ||||| |||| ||||||| ||||||||    
T  16864551 aggctaaactgcagttttaaccccctaacttttacaatggtgcgattttggtcccctatt 16864492  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 20410276 - 20410217
Alignment:
Q  360 aggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||| ||||||||| ||||||||||||| ||||| |||| |||||| |||||||||    
T  20410276 aggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgaccccctatt 20410217  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 2853732 - 2853676
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccc 415  Q
    |||||| ||| |||||||||||| |||||||||| |||   ||||||||||||||||    
T  2853732 taggcttaatagcagttttaacctcctaactttctcaaagttgcaattttggccccc 2853676  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 359 - 447
Target Start/End: Original strand, 12961982 - 12962070
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctattnnnnnnnnttaaattttaaacccctatg 447  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||        ||||||||||||||||||||    
T  12961982 taggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggccccctattaaaaaaaattaaattttaaacccctatg 12962070  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 23039123 - 23039182
Alignment:
Q  360 aggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  23039123 aggctaaattgcagttttaaccccctaactttcacaatggtgtaattttggccccctatt 23039182  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 447
Target Start/End: Complemental strand, 23039587 - 23039499
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctattnnnnnnnnttaaattttaaacccctatg 447  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||| ||||||| ||||||||        ||||||||||||||||||||    
T  23039587 taggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggtcccctattaaaaaaaattaaattttaaacccctatg 23039499  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 38612217 - 38612277
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||||| ||||||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  38612217 taggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38612277  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 38613477 - 38613417
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||||| ||||||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  38613477 taggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38613417  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 54539106 - 54539167
Alignment:
Q  358 ataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||||| ||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  54539106 ataggctaaactgcagttttaaccccctaactttcacaatggtgtgattttggccccctatt 54539167  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 54539559 - 54539470
Alignment:
Q  358 ataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctattnnnnnnnnttaaattttaaacccctatg 447  Q
    |||||||||| ||||||||||||||| ||||||| ||||| |||| ||||||||||||||||        ||||||||||||||||||||    
T  54539559 ataggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggccccctattaaaaaaaattaaattttaaacccctatg 54539470  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 48053129 - 48053184
Alignment:
Q  364 taaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||    
T  48053129 taaactgcagttttaaccctctaactttcacaatggtgcgattttggccccctatt 48053184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 48060838 - 48060802
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaat 397  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48060838 ggctaaactgcagttttaaccccctaactttcacaat 48060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 11413499 - 11413441
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    |||||| ||||||||||||| ||| |||| ||| |||||  ||||||||||||||||||    
T  11413499 taggcttaattgcagttttagccctctaagttttacaatcttgcaattttggcccccta 11413441  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 417
Target Start/End: Original strand, 5001188 - 5001256
Alignment:
Q  349 taataacaaataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    |||||| |||||||||||| |||| ||||   |||||| |||||| |||  ||||||||||||||||||    
T  5001188 taataaaaaataggctaaagtgcacttttcctcccctatctttcaaaatcttgcaattttggcccccta 5001256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 25154505 - 25154465
Alignment:
Q  351 ataacaaataggctaaattgcagttttaaccccctaacttt 391  Q
    |||| ||||||||| ||| ||||||||||||||||||||||    
T  25154505 ataagaaataggcttaatagcagttttaaccccctaacttt 25154465  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 45413537 - 45413477
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  45413537 taggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 45413477  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 1389233 - 1389291
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1389233 ggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggccccctatt 1389291  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 45412334 - 45412393
Alignment:
Q  360 aggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||||||    
T  45412334 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctatt 45412393  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 1394913 - 1394854
Alignment:
Q  360 aggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||  ||||||||||||||||||||||||| ||| |||| ||||| ||||||||||    
T  1394913 aggctaatctgcagttttaaccccctaactttcagaatggtgcgattttagccccctatt 1394854  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 28851730 - 28851672
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||| ||||||||| |||||||||||||||||||  ||| |||||| |||||||||    
T  28851730 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgaccccctatt 28851672  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 28847336 - 28847391
Alignment:
Q  364 taaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||| ||||||||| ||||||||| |||||||||  ||||||||||| ||||||||    
T  28847336 taaactgcagttttgaccccctaattttcacaatgttgcaattttggtcccctatt 28847391  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 8061855 - 8061912
Alignment:
Q  360 aggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    |||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  8061855 aggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 8067510 - 8067452
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||||| |||||||||| |||||||||||||| ||| |||| ||||||||||||||    
T  8067510 taggctaaactgcagttttacccccctaactttcagaatggtgcgattttggcccccta 8067452  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 17415747 - 17415695
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccc 413  Q
    ||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||    
T  17415747 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccc 17415695  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 17414544 - 17414602
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    ||||||| ||||||||| |||| |||||||| ||||| |||| ||||||||||||||||    
T  17414544 ggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggccccctatt 17414602  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 24242015 - 24242073
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||||| ||||||||| ||||||||||||||||||  |||| |||||| |||||||    
T  24242015 taggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttgacccccta 24242073  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 14190547 - 14190489
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||||| ||||||||| ||||||||||||||| ||  |||| ||||||| ||||||    
T  14190547 taggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14190489  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 14189664 - 14189720
Alignment:
Q  361 ggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||| ||||||||| ||||||||||||||| ||  |||| ||||||| ||||||    
T  14189664 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14189720  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 46313335 - 46313274
Alignment:
Q  358 ataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggccccctatt 419  Q
    |||||||||| ||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  46313335 ataggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggccccctatt 46313274  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 50380032 - 50379974
Alignment:
Q  359 taggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||||| ||||||||| ||||||||||||||| ||  |||| ||||||| ||||||    
T  50380032 taggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 50379974  T

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Target: scaffold1458 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 1466 - 1527
Alignment:
Q  356 aaataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||||| ||| ||||||||| |||||||||||||||||   ||  ||||||||||||||    
T  1466 aaataggcttaatagcagttttagccccctaactttcacaaagttgagattttggcccccta 1527  T

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Target: scaffold0515 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 3634 - 3695
Alignment:
Q  356 aaataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||||| ||| ||||||||| ||||||||||||| |||   ||| ||||||||||||||    
T  3634 aaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccccta 3695  T

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Target: scaffold0306 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 3634 - 3695
Alignment:
Q  356 aaataggctaaattgcagttttaaccccctaactttcacaatagtgcaattttggcccccta 417  Q
    ||||||||| ||| ||||||||| ||||||||||||| |||   ||| ||||||||||||||    
T  3634 aaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccccta 3695  T

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