View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12627_low_5 (Length: 354)
Name: NF12627_low_5
Description: NF12627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12627_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 336
Target Start/End: Complemental strand, 23032423 - 23032092
Alignment:
| Q |
5 |
gatagatgttgtacgggtgcagacagacacgtgtcaaacacgaagacacacctaattccctacgtgtttgtacttgatagctatactatatatattctat |
104 |
Q |
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| T |
23032423 |
gatagatgtcgtacgggtgcagacagacacgtgtcaaacacgaagacacgcctaattccctacgtgtttgtacttgatagctatactatatatattctat |
23032324 |
T |
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| Q |
105 |
gtgcatgttttgcattgaaaacaagaataagaactgtgataattcttggggatgaagaacatgaatataattctaataagtaataacacagtataaagta |
204 |
Q |
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| T |
23032323 |
gtgcatgttttgcattgaaaacaagaataagaactgtgataattcttggggatgaagaacatgaatataattctaataagtaataacacagtataaagta |
23032224 |
T |
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| Q |
205 |
tgatatgatattcctcatgcataattgaattgtatctacctatttggagtaagtgctggattattcaggatagaggctaaataattaacctcttttaact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23032223 |
tgatatgatattcctcatgcataattgaattgtatctacctacttggagtaagtgctggattattcaggatagaggctaaataattaacctcttttaact |
23032124 |
T |
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| Q |
305 |
tttgtatatgcagattatcaagttgatacttg |
336 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23032123 |
tttgtatatgcagattatcaagttgatacttg |
23032092 |
T |
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