View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12627_low_6 (Length: 310)
Name: NF12627_low_6
Description: NF12627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12627_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 11573507 - 11573799
Alignment:
| Q |
19 |
ccaattgatgtttgaaccgtgtctcctccacttatgcggtaaattttcaatggttattatcattttatctaagtaacaaaagagaaaaa-tgtaattatg |
117 |
Q |
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| T |
11573507 |
ccaattgatgtttgaaacgtgtctcctccacttatgcagtaaattttcaatggttattatcattttatctatgtaacaaaagagaaaaaatgtaattatg |
11573606 |
T |
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| Q |
118 |
caaggaaagttaaacgggcatgcaatgtaagnnnnnnnnaattttgcaattgaataaatacaaacaatgttaaaatataaactttaaagaatgatatcac |
217 |
Q |
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| T |
11573607 |
caaggaaagttaaacgggcatgcaatgtaagttttttttaattttgcagttgaataaatacaaacaatgttaaaatatatactttaaagaatgatatcac |
11573706 |
T |
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| Q |
218 |
atggactattattgaaccttagtgtaaatttgaatttaggtacccgtgatttatcctagaaatggggttgaagaagcataagattgaagattc |
310 |
Q |
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| T |
11573707 |
atggtctattattgaaccttagtgtaaatttgaatttaggtacccgtgatttgtcctagaaatggggttgaagaagcataagattgaagattc |
11573799 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 3509532 - 3509580
Alignment:
| Q |
51 |
tatgcggtaaattttcaatggttattatcattttatctaagtaacaaaa |
99 |
Q |
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| T |
3509532 |
tatgtggtgaattttcaatggctattatcattttatctatctaacaaaa |
3509580 |
T |
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