View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12627_low_7 (Length: 226)
Name: NF12627_low_7
Description: NF12627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12627_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 41107996 - 41108189
Alignment:
| Q |
17 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
116 |
Q |
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| T |
41107996 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
41108095 |
T |
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| Q |
117 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttc |
210 |
Q |
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| T |
41108096 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttc |
41108189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 41129120 - 41129313
Alignment:
| Q |
17 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
116 |
Q |
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| T |
41129120 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
41129219 |
T |
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| Q |
117 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttc |
210 |
Q |
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| T |
41129220 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttc |
41129313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 41143563 - 41143370
Alignment:
| Q |
17 |
ggcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
116 |
Q |
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| T |
41143563 |
ggcatatggattagaaagggcaatgagcgaagtagtacgccatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaa |
41143464 |
T |
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| Q |
117 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttc |
210 |
Q |
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| T |
41143463 |
ccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttc |
41143370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 41119420 - 41119228
Alignment:
| Q |
18 |
gcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaac |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41119420 |
gcatatggattagaaagggcaatgagcgaagtagtacgccatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaac |
41119321 |
T |
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| Q |
118 |
caattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttc |
210 |
Q |
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| T |
41119320 |
caattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttc |
41119228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 41035591 - 41035773
Alignment:
| Q |
18 |
gcatatggattagaaagggcaatgagtgaagtagtacggcatccagaggttatgtcaaaagcaaagaaggaattagaggaaaccattggattaggcaaac |
117 |
Q |
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|||||||||||||||||| ||||| ||||| || ||| |||||||| ||||| |||||| || |||||| | |||||||||||||| | |||||| |
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| T |
41035591 |
gcatatggattagaaaggacaatgggtgaattaatacacaatccagagactatgttaaaagccaaaaaggaactgagggaaaccattggatcatgcaaac |
41035690 |
T |
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| Q |
118 |
caattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctcca |
200 |
Q |
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|||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41035691 |
taattgaagaatcagacattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacaccctccagctcca |
41035773 |
T |
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