View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12628_low_1 (Length: 387)
Name: NF12628_low_1
Description: NF12628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12628_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 31963443 - 31963082
Alignment:
| Q |
11 |
cataggagcatttaagtcttagattcatgtatttagggagttggatttgtattacttctccttataaacttaacatgtaattaattatgaaatgtataca |
110 |
Q |
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| T |
31963443 |
cataggagcatttaagtcttagattcatgtatttagggagttggatttgtattacttctccttataaacttaacatgtaattaattatgaaatgtataca |
31963344 |
T |
|
| Q |
111 |
aatatcatggtggctgagttctgtactcactcaaccacattcagaacatttcttctccatatttttcatgattctgttgcta-tttattaagtcagtttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
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| T |
31963343 |
aatatcatggtggctgagttctgtactcactcaaccacattcagaacatttcttctccatatttttcacgattctcttgctattttattaagtcagtttt |
31963244 |
T |
|
| Q |
210 |
acctgtatgattctattactttcctggcttcatctggtgtaggtggtatgaaatctgaagcataatcatgataactgccacggtgatagtaagaagttcc |
309 |
Q |
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| T |
31963243 |
acctgtatgattctattactttcctggcttcatctggtgtaggtggtatgaaatctgaagcataatcatgataattgccacggcgatagtaagaagttcc |
31963144 |
T |
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| Q |
310 |
cttgattaccgttaccaggtcaatgctgtcttcctgcaaagtccccaatgttaggttcagtt |
371 |
Q |
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| T |
31963143 |
cttgattaccattaccaggtcaatgctgtcttcctgcaaagtccccaatgttaggttcagtt |
31963082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 215 - 368
Target Start/End: Complemental strand, 31948421 - 31948268
Alignment:
| Q |
215 |
tatgattctattactttcctggcttcatctggtgtaggtggtatgaaatctgaagcataatcatgataactgccacggtgatagtaagaagttcccttga |
314 |
Q |
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| T |
31948421 |
tatgattctattattttcttggcttcatctggtgtcggcggtatgaaatccgaagcataatcatgatacttgccacgccggtagtaagaagttcccttga |
31948322 |
T |
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| Q |
315 |
ttaccgttaccaggtcaatgctgtcttcctgcaaagtccccaatgttaggttca |
368 |
Q |
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| T |
31948321 |
ttaccgttagtaggtcaatacttccttcctgcgaatgtcccaaagttaggttca |
31948268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 348
Target Start/End: Complemental strand, 31974891 - 31974752
Alignment:
| Q |
209 |
tacctgtatgattctattactttcctggcttcatctggtgtaggtggtatgaaatctgaagcataatcatgataactgccacggtgatagtaagaagttc |
308 |
Q |
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||||||| |||||||||||||| ||||||||| |||||||| ||||||||||| ||| |||| |||||||| |||||||| | |||||||||| || |
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| T |
31974891 |
tacctgtttgattctattacttctttggcttcataaggtgtaggcggtatgaaatcagaaacatagtcatgatacttgccacggcggtagtaagaagctc |
31974792 |
T |
|
| Q |
309 |
ccttgattaccgttaccaggtcaatgctgtcttcctgcaa |
348 |
Q |
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| T |
31974791 |
ccttgaggatggttaccaggtcaatgctgccttcctgcaa |
31974752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 36084404 - 36084551
Alignment:
| Q |
29 |
ttagattcatgtatttagggagttggatttgtat-tacttctccttataaacttaacatgtaattaattatgaaatgtatacaaatatcatggtggctga |
127 |
Q |
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|||||||||||| |||||||||||||| || || || |||||||| ||||| |||||||| |||||| ||| | | || | ||||| |||||| ||||| |
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| T |
36084404 |
ttagattcatgtctttagggagttggacctgcatgtatttctccttgtaaacataacatgttattaataatggagtctaaataaataacatggttgctga |
36084503 |
T |
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| Q |
128 |
gttctgtactcactcaaccacattcagaacatttcttctccatatttt |
175 |
Q |
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| T |
36084504 |
gttctttactcactcaagcacattcagaaaaattcttctccctatttt |
36084551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 178
Target Start/End: Original strand, 889558 - 889701
Alignment:
| Q |
36 |
catgtatttagggagttggatttgtatt-acttctccttataaacttaacatgtaattaattatgaaatgtatacaaatatcatggtggctgagttctgt |
134 |
Q |
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|||| ||||||||||||||| | |||| | || ||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||||| | || | |
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| T |
889558 |
catgcatttagggagttggacctatatttatttatccttgtaaacataacatgtaattaattatgaagtgtatataaatatcatggtggctgactgcttt |
889657 |
T |
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| Q |
135 |
actcactcaaccacattcagaacatttcttctccatatttttca |
178 |
Q |
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| T |
889658 |
acttactcgagcacattcagaaaatttcttattcctatttttca |
889701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 45566950 - 45567020
Alignment:
| Q |
75 |
taaacttaacatgtaattaattatgaaatgtatacaaatatcatggtggctgag-ttctgtactcactcaa |
144 |
Q |
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| T |
45566950 |
taaacataacatgtaattaatcatgaagtgtatataaatatcatggttactgagtttctttactcactcaa |
45567020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 15661749 - 15661838
Alignment:
| Q |
29 |
ttagattcatgtatttagggagttggatttgta-ttacttctccttataaacttaacatgtaattaattatgaaatgtatacaaatatca |
117 |
Q |
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||||||||||||||| |||||| |||| ||||| ||| |||||||| ||||| ||||||||| ||||||||| | |||||| |||||||| |
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| T |
15661749 |
ttagattcatgtattcagggagctggagttgtatttatttctccttgtaaacataacatgtagttaattatggattgtatataaatatca |
15661838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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