View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12628_low_4 (Length: 281)

Name: NF12628_low_4
Description: NF12628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12628_low_4
NF12628_low_4
[»] chr7 (7 HSPs)
chr7 (49-264)||(37580915-37581134)
chr7 (134-259)||(37480685-37480821)
chr7 (134-188)||(6778701-6778755)
chr7 (134-187)||(6774415-6774468)
chr7 (201-259)||(6778619-6778677)
chr7 (134-188)||(37476163-37476217)
chr7 (201-259)||(37476241-37476299)
[»] chr5 (1 HSPs)
chr5 (132-188)||(8992555-8992611)
[»] chr1 (1 HSPs)
chr1 (132-187)||(45071637-45071692)
[»] chr4 (2 HSPs)
chr4 (142-179)||(52791814-52791851)
chr4 (140-180)||(11160852-11160892)
[»] chr3 (1 HSPs)
chr3 (132-188)||(50915239-50915295)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 49 - 264
Target Start/End: Complemental strand, 37581134 - 37580915
Alignment:
Q  49 taaccacaattattgattcc-atgggttttccccgggacgagctgcctcctcttcattcggctttggactgaagttattctgactgttaaatgtcttgcg 147  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  37581134 taaccacaattattgattcccatgggttttccccgggacgagctgcctcctcttcgttcggctttggactgaagttattctgactgttaaacgtcttgcg 37581035  T
Q  148 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaag---caacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37581034 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaagcttcaacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 37580935  T
Q  245 catagcctgatcaacatgct 264  Q
    ||||||||||||||||||||    
T  37580934 catagcctgatcaacatgct 37580915  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 37480685 - 37480821
Alignment:
Q  134 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatttg 222  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||        ||||||||   ||  || |||||||| |||||||||||||    
T  37480685 ttaaaagtctttcgaatttcctccggcgtcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgatattcaagtaatttg 37480784  T
Q  223 cagcttgaatgagttcgaaaagcatagcctgatcaac 259  Q
    ||||  |||||||  |||||||| |||||||||||||    
T  37480785 cagcaagaatgagaccgaaaagcttagcctgatcaac 37480821  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 6778755 - 6778701
Alignment:
Q  134 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 188  Q
    ||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||    
T  6778755 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacag 6778701  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 6774468 - 6774415
Alignment:
Q  134 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccaca 187  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||    
T  6774468 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccaca 6774415  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 6778677 - 6778619
Alignment:
Q  201 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaac 259  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||    
T  6778677 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtgtatcctgatcaac 6778619  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 37476163 - 37476217
Alignment:
Q  134 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 188  Q
    ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||    
T  37476163 ttaaaagtctttcgaatttcctctggtgtcttccctttgatcatgtccgccacag 37476217  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 37476241 - 37476299
Alignment:
Q  201 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaac 259  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||    
T  37476241 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtttatcctgatcaac 37476299  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 8992611 - 8992555
Alignment:
Q  132 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 188  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||    
T  8992611 tgttaaaggtcttgcgaatctcctcaggtgtcttccccttgatcatgtctgccacag 8992555  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 45071637 - 45071692
Alignment:
Q  132 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccaca 187  Q
    ||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||    
T  45071637 tgttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccaca 45071692  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 52791814 - 52791851
Alignment:
Q  142 cttgcgaatctcctccggcgtcttccccttgatcatgt 179  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  52791814 cttgcaaatctcctccggcgtcttacccttgatcatgt 52791851  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 11160892 - 11160852
Alignment:
Q  140 gtcttgcgaatctcctccggcgtcttccccttgatcatgtc 180  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  11160892 gtcttacgaatctcctccggcgtcctacccttgatcatgtc 11160852  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 50915295 - 50915239
Alignment:
Q  132 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 188  Q
    ||||||| || || ||||| |||||||| |||||||| || ||||||||||||||||    
T  50915295 tgttaaaagtgtttcgaatttcctccggtgtcttccctttcatcatgtccgccacag 50915239  T

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