View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12628_low_5 (Length: 250)
Name: NF12628_low_5
Description: NF12628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12628_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 1178052 - 1177817
Alignment:
| Q |
10 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatca |
109 |
Q |
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| T |
1178052 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatca |
1177953 |
T |
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| Q |
110 |
agtgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcgattcggtctacgatttcatcaccaggaaa |
209 |
Q |
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| T |
1177952 |
agtgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcaattcggtctacgaattgatcaccaggaaa |
1177853 |
T |
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| Q |
210 |
gagggagcagaagtagatacgttccaactcctcgcc |
245 |
Q |
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| T |
1177852 |
gagggagcagaagtagatatgttccaactcctcgcc |
1177817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 6840828 - 6840996
Alignment:
| Q |
10 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagg-gggtataaggtggacctgtttagttgttgggttccatagaatc |
108 |
Q |
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||||| |||||||||| |||||||||||| ||||| | | |||||||||||||||| ||| ||| |||| || |||||| ||||||||||||||||||| |
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| T |
6840828 |
gcacaaaaaccatacaaggaatcatcatatttaga-tcagagaatgagggtgcaggaggggatacggtgaacttgtttaactgttgggttccatagaatc |
6840926 |
T |
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| Q |
109 |
aagtgaccaaga---gttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatg |
175 |
Q |
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| T |
6840927 |
aagtgaccaagatttgttgaatgccaataaaaagcttttaaaaagaaaacaccattgcaattgccatatg |
6840996 |
T |
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