View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12628_low_7 (Length: 240)
Name: NF12628_low_7
Description: NF12628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12628_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 1177820 - 1177611
Alignment:
| Q |
15 |
cgccaccgtcacaggagagaagagtgatgtagggaggtttgaatccatcaatgggtctgtgatagatcatgagactatggcctttatcgtatttagaatt |
114 |
Q |
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| T |
1177820 |
cgccaccatcgcaggagagaagagtgatgtagggaggtttgaatccatcaatgggtctgtgatagatcatgagactatggcctttatcgtatttagaatt |
1177721 |
T |
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| Q |
115 |
gtgacgcctccacctattcacaaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaatcgcatcaacgacttcgctggcagacga |
214 |
Q |
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| T |
1177720 |
gtgacgcctccacctattcacaaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaatcgcatcaacgatttcactggcagatga |
1177621 |
T |
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| Q |
215 |
attagtatct |
224 |
Q |
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| T |
1177620 |
agtagtatct |
1177611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 6841078 - 6841249
Alignment:
| Q |
21 |
cgtcacaggagagaagagtgatgtagggaggtttgaatccatcaatgggtctgtgatagatcatgagactatggcctttatcgtatttagaattgtgacg |
120 |
Q |
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| T |
6841078 |
cgtcacaggagagaagagcgatatagggaggtctgaat---tcaatgggtctgggaatgatcatgagactatggcctttacggttttcagaattgtgcag |
6841174 |
T |
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| Q |
121 |
cctccacctattcacaaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaatcgcatcaa |
195 |
Q |
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| T |
6841175 |
tttccacctattcacaaaatatggagttttgaaaagaatgttccaagatttttcaacagatttgaaacgcatcaa |
6841249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 31104201 - 31104252
Alignment:
| Q |
135 |
caaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaa |
186 |
Q |
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| T |
31104201 |
caaaatagggacttttgatgatattgttccatgatttttgaacacatttgaa |
31104252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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