View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12629_high_2 (Length: 324)
Name: NF12629_high_2
Description: NF12629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12629_high_2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 324
Target Start/End: Original strand, 10011437 - 10011709
Alignment:
| Q |
41 |
ggtgttcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatggagatggcatt |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10011437 |
ggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttg----------atgaaagattctggcggagaacatgcagctatggagatggcatt |
10011526 |
T |
|
| Q |
141 |
gaagagttggatggatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaatnnnnnnngttatga |
240 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10011527 |
gaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatga |
10011626 |
T |
|
| Q |
241 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggtacattattaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10011627 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta-attattaa |
10011709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 10011371 - 10011409
Alignment:
| Q |
11 |
cacagagcttggatttggacaacaaagaggggtgttcat |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10011371 |
cacagagcttggatttggacaacaaagaggggtgttcat |
10011409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University