View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12629_low_2 (Length: 314)
Name: NF12629_low_2
Description: NF12629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12629_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 33888606 - 33888891
Alignment:
| Q |
13 |
cacagacaacaggagcaagagatcgatgatgacttgctctagggttcgctattttatcttctttttttaaatnnnnnnnngagggattttgtttatcaaa |
112 |
Q |
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| T |
33888606 |
cacagacaacaggagcaagagatcgatgatgacttgctctagggttcgctattttatcttctttttttaaataaaaaaaagagggattttgtttatcaaa |
33888705 |
T |
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| Q |
113 |
tatcnnnnnnnnnnnnaagtaactacttcgttagaaaaacattagatgattgatacaagttagtggcaaaatattatgacaatggaaaatttagattaat |
212 |
Q |
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| T |
33888706 |
tatcttttttatttttaagtaactacttcgttagaaaaacattagatgattgatacaagttagtggcaaaatattatgacaatggaaaatttagattaat |
33888805 |
T |
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| Q |
213 |
aaagcacttctacactcaatcgtaacttggtgcaatcaataggcttaaaagagataatannnnnnngtaggtcataaccaactaac |
298 |
Q |
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| T |
33888806 |
aaagcacttctacactcaatcataacttggtgcaatcaataggcttaaaagagataatatttttttgtaggtcataaccaactaac |
33888891 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 28403712 - 28403654
Alignment:
| Q |
212 |
taaagcacttctacactcaatcgtaacttggtgcaatcaataggcttaaaagagataat |
270 |
Q |
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|||||||| | |||||| |||| |||||||||||||| ||||||||||||||||||| |
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| T |
28403712 |
taaagcacgtttacactgaatcaatacttggtgcaatcagtaggcttaaaagagataat |
28403654 |
T |
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