View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_high_12 (Length: 442)

Name: NF1262_high_12
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_high_12
NF1262_high_12
[»] chr3 (8 HSPs)
chr3 (201-429)||(8166229-8166457)
chr3 (29-155)||(8166106-8166231)
chr3 (317-388)||(1312940-1313011)
chr3 (329-429)||(27305607-27305709)
chr3 (335-422)||(51352036-51352125)
chr3 (31-62)||(8141848-8141879)
chr3 (256-323)||(27305519-27305586)
chr3 (323-388)||(54738874-54738939)
[»] chr2 (6 HSPs)
chr2 (317-421)||(12123470-12123576)
chr2 (333-422)||(13121942-13122033)
chr2 (255-323)||(41455210-41455279)
chr2 (255-309)||(12123392-12123447)
chr2 (356-424)||(41446314-41446383)
chr2 (320-372)||(36191142-36191194)
[»] chr7 (4 HSPs)
chr7 (331-422)||(36574415-36574508)
chr7 (332-429)||(23564959-23565061)
chr7 (256-323)||(30843286-30843354)
chr7 (258-321)||(3904275-3904338)
[»] chr8 (7 HSPs)
chr8 (254-411)||(32901987-32902161)
chr8 (256-323)||(11711805-11711873)
chr8 (317-415)||(7597799-7597899)
chr8 (256-323)||(29796131-29796198)
chr8 (317-415)||(8153970-8154070)
chr8 (317-378)||(8965568-8965629)
chr8 (329-385)||(3231741-3231797)
[»] chr4 (5 HSPs)
chr4 (317-388)||(44967711-44967782)
chr4 (332-415)||(5207740-5207825)
chr4 (256-311)||(21703693-21703748)
chr4 (353-429)||(29056528-29056606)
chr4 (325-423)||(47038302-47038404)
[»] chr5 (3 HSPs)
chr5 (317-388)||(9049233-9049304)
chr5 (332-377)||(30897636-30897681)
chr5 (280-320)||(32583116-32583156)
[»] chr1 (8 HSPs)
chr1 (256-310)||(37282498-37282552)
chr1 (332-388)||(37282590-37282646)
chr1 (317-415)||(43342194-43342293)
chr1 (323-422)||(5460083-5460184)
chr1 (256-309)||(3461007-3461060)
chr1 (258-322)||(15820596-15820659)
chr1 (255-287)||(16455953-16455985)
chr1 (255-311)||(45655467-45655523)
[»] chr6 (1 HSPs)
chr6 (274-321)||(30683713-30683760)
[»] scaffold0219 (1 HSPs)
scaffold0219 (317-410)||(27326-27421)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 201 - 429
Target Start/End: Original strand, 8166229 - 8166457
Alignment:
Q  201 tggagataccctagcggacatacttacataacaacaattcttgaatt-atattatttgttgtgaattaggactcaaaattacaccaataaatttagacgt 299  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  8166229 tggacataccctaatggacatacttacataacaacaattcttgaatttatattatttgttgtgaattaggactcaaaattacaccaataaacttagacct 8166328  T
Q  300 gtggagcaaaaagaagtagtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccatgcaaaagata 399  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  8166329 gtggagcaaaaagaagtagtaatctcaaacaacaacaacaatgacaaacttagatctaatctaggaat-aagtgtaaaacacaaaatcatgcaaaagata 8166427  T
Q  400 aatagagaagaaaaactaacacactaagaa 429  Q
    | |||||||||||||||||| |||||||||    
T  8166428 actagagaagaaaaactaacgcactaagaa 8166457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 8166106 - 8166231
Alignment:
Q  29 agaatccaccagtgtacattactgaaaatggtaattgtgtatgtttatataatttattttcattaattagtatagagagatccatataaggaagaagcaa 128  Q
    ||||||||||||| |||||||||||||||||||| ||  |||| || |||||||| ||||||||| |||||||||||||| |||||| ||||||||||||    
T  8166106 agaatccaccagtctacattactgaaaatggtaactggctatgcttctataattt-ttttcattatttagtatagagagacccatattaggaagaagcaa 8166204  T
Q  129 taagtctccataaggaggataatttgg 155  Q
    |||||||||||||||||||||||||||    
T  8166205 taagtctccataaggaggataatttgg 8166231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 1312940 - 1313011
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 388  Q
    |||||| |||||||||||| | ||| ||||||||| |||||||||||||| |||||||||||||| ||||||    
T  1312940 agtaacatcaaacaacaacgataataacaaacttagatctaatctagaaaccaagtgtaaaacaccaaacca 1313011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 429
Target Start/End: Original strand, 27305607 - 27305709
Alignment:
Q  329 caacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaa 426  Q
    ||||||||||||| || ||| || ||||||||||| | | ||||| ||||||||||||  ||  |||||||||||||||||||| |||| ||||||| ||    
T  27305607 caacaacaacaataaccaacctagatctaatctaggagtaaagtgaaaaacacaaaaccacaaacaaaagataaatagagaagagaaacaaacacacaaa 27305706  T
Q  427 gaa 429  Q
    |||    
T  27305707 gaa 27305709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Original strand, 51352036 - 51352125
Alignment:
Q  335 caacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacaca 422  Q
    ||||||| |||||| || ||||||||||| |||||| || ||||||||||||  || | |||||||||| |||||||| |||| ||||||    
T  51352036 caacaataacaaacctagatctaatctaggaatcaaatgaaaaacacaaaaccacaagtaaaagataaagagagaagagaaacaaacaca 51352125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 8141848 - 8141879
Alignment:
Q  31 aatccaccagtgtacattactgaaaatggtaa 62  Q
    ||||||||||||||||||||||||||||||||    
T  8141848 aatccaccagtgtacattactgaaaatggtaa 8141879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 27305519 - 27305586
Alignment:
Q  256 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 323  Q
    ||||||||||| ||||||||||| ||||||||||| |  || ||||||||||||   |||||||||||    
T  27305519 tgttgtgaattcggactcaaaatcacaccaataaactatgatgtgtggagcaaaggaaagtagtaacc 27305586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 54738874 - 54738939
Alignment:
Q  323 ctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 388  Q
    |||||| || || |||||| |||||||||||| |||||||||||||||| |  || ||||||||||    
T  54738874 ctcaaaaaaaaaaaacaataacaaacttaaatttaatctagaaatcaagggagaagcacaaaacca 54738939  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 421
Target Start/End: Original strand, 12123470 - 12123576
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa--ccatgcaaaagataaatagagaagaaaaa 414  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |||| ||||||   || |||||||||||| ||| |||| |||    
T  12123470 agtaacctcaaacaacaacaacaataacaaacctatatctaatctagaaatcaagtgaaaaatacaaaatcacaagcaaaagataaagagataagagaaa 12123569  T
Q  415 ctaacac 421  Q
    | |||||    
T  12123570 caaacac 12123576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 13122033 - 13121942
Alignment:
Q  333 aacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacaca 422  Q
    ||||||||| |||||| || || |||||||||||||||||| |||||| |||||  || |||||||||||| |||||||| |||| ||||||    
T  13122033 aacaacaataacaaacctagatgtaatctagaaatcaagtgaaaaacataaaaccacaagcaaaagataaagagagaagagaaacaaacaca 13121942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 41455279 - 41455210
Alignment:
Q  255 ttgttgtgaattaggactcaaaatt-acaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 323  Q
    ||||||||||||  ||||||||| | ||| ||||||| |||||| |||||||||||| ||||||||||||    
T  41455279 ttgttgtgaattcagactcaaaactcacaacaataaacttagacatgtggagcaaaaggaagtagtaacc 41455210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 12123392 - 12123447
Alignment:
Q  255 ttgttgtgaattaggactcaaaa-ttacaccaataaatttagacgtgtggagcaaa 309  Q
    |||||||||||| |||||||||| ||||||| ||||||||| | ||||||||||||    
T  12123392 ttgttgtgaatttggactcaaaaattacacctataaatttatatgtgtggagcaaa 12123447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 41446383 - 41446314
Alignment:
Q  356 taatctagaaatcaagtgtaaaacacaaaac-catgcaaaagataaatagagaagaaaaactaacacact 424  Q
    |||||||| || ||||| ||||||||||| | || |||||||||||| |||||||| |||| ||||||||    
T  41446383 taatctagtaaccaagtataaaacacaaaccacaagcaaaagataaagagagaagagaaacaaacacact 41446314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 36191142 - 36191194
Alignment:
Q  320 aacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagt 372  Q
    |||||||| |||||| |||||| |||||| || ||||||||||| ||||||||    
T  36191142 aacctcaagcaacaataacaataacaaacctagatctaatctaggaatcaagt 36191194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 36574415 - 36574508
Alignment:
Q  331 acaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacaca 422  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||||  || | |||||||||| ||||||||||||| ||||||    
T  36574415 acaacaacaataacaaacttagatctaatctaggaatcaagtgaaaaacacaaaaccacaagaaaaagataaagagagaagaaaaacaaacaca 36574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 429
Target Start/End: Original strand, 23564959 - 23565061
Alignment:
Q  332 caacaacaatgacaaa-cttaaatctaatctagaaatcaa-gtgtaaaacacaaaacc---atgcaaaagataaatagagaagaaaaactaacacactaa 426  Q
    |||||||||| ||||| | || |||||||||||||||||| ||| ||| ||||||| |   | ||||||||||||||||||||| |||| ||||||| ||    
T  23564959 caacaacaataacaaaacctagatctaatctagaaatcaaagtgaaaatcacaaaaaccacaagcaaaagataaatagagaagagaaacaaacacaccaa 23565058  T
Q  427 gaa 429  Q
    |||    
T  23565059 gaa 23565061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 30843286 - 30843354
Alignment:
Q  256 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaag-aagtagtaacc 323  Q
    |||||||||||  || ||||||| ||||||||||| ||||| ||||||||||||| | |||||||||||    
T  30843286 tgttgtgaattcagaatcaaaatcacaccaataaacttagaagtgtggagcaaaaggaaagtagtaacc 30843354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 3904275 - 3904338
Alignment:
Q  258 ttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaa 321  Q
    ||||||||| | ||||||||| ||||| ||||||||||| |||||||| |||| || |||||||    
T  3904275 ttgtgaatttgaactcaaaatgacacctataaatttagatgtgtggagtaaaaggaggtagtaa 3904338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 411
Target Start/End: Original strand, 32901987 - 32902161
Alignment:
Q  254 tttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaa-agaagtagtaac---------------ctcaaacaacaacaa 337  Q
    ||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||||||               |||||||||||||||    
T  32901987 tttgttgtgaattcggactcaaaatcagaccaataaacttagatgtgtggagcaaaagagaagtagtaactaatatcaaagcaacctcaaacaacaacaa 32902086  T
Q  338 caatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacc--atgcaaaagataaatagagaagaa 411  Q
    |||  |||||| || ||||||||||| || |||||| |||||||||||||  | |||||||||||| |||||||||    
T  32902087 caacaacaaacctagatctaatctaggaaccaagtgaaaaacacaaaaccaaaagcaaaagataaa-agagaagaa 32902161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 11711805 - 11711873
Alignment:
Q  256 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaag-aagtagtaacc 323  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||    
T  11711805 tgttgtgaattcggactcaaaattacaccaataaacttagatgtgtggagcaaaaggaaagtagtaacc 11711873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 7597899 - 7597799
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaa 414  Q
    |||||||| || ||||| ||||||| ||||||||| ||||||| ||| || ||||||||||||||||||| ||   ||||||||||| |||||||| |||    
T  7597899 agtaacctgaagcaacaccaacaataacaaacttagatctaatttaggaaccaagtgtaaaacacaaaacgataaacaaaagataaagagagaagagaaa 7597800  T
Q  415 c 415  Q
    |    
T  7597799 c 7597799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 29796131 - 29796198
Alignment:
Q  256 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 323  Q
    |||||||||||  ||||||| || |||||||||||||| || ||||||||||||| |||||| |||||    
T  29796131 tgttgtgaattcagactcaacatcacaccaataaattttgatgtgtggagcaaaaggaagtaataacc 29796198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 8154070 - 8153970
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa--ccatgcaaaagataaatagagaagaaaaa 414  Q
    ||||||| ||| ||||||||| ||| |||||| || || |||||||| ||| ||||| |||||||||||   ||||||||||||||| | |||||| |||    
T  8154070 agtaaccacaagcaacaacaataataacaaacctagatgtaatctaggaataaagtgaaaaacacaaaattacatgcaaaagataaacaaagaagagaaa 8153971  T
Q  415 c 415  Q
    |    
T  8153970 c 8153970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 8965568 - 8965629
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaa 378  Q
    ||||||| ||| ||||||||||||| |||||| || || |||||||| ||||||||| ||||    
T  8965568 agtaaccacaagcaacaacaacaataacaaacctagatttaatctaggaatcaagtgaaaaa 8965629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 3231741 - 3231797
Alignment:
Q  329 caacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa 385  Q
    ||||||||||||| |||||  || || |||||| | |||||||||||||||||||||    
T  3231741 caacaacaacaataacaaatctagatataatcttggaatcaagtgtaaaacacaaaa 3231797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 44967711 - 44967782
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 388  Q
    ||||||||||| ||||||||||| | | |||| || |||||||||| |||||||||||||||||||||||||    
T  44967711 agtaacctcaagcaacaacaacactaataaacatatatctaatctaaaaatcaagtgtaaaacacaaaacca 44967782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 5207740 - 5207825
Alignment:
Q  332 caacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca--tgcaaaagataaatagagaagaaaaac 415  Q
    ||||||||||  ||||| || ||||||| ||| ||||||||| ||| ||||||||||  ||||| |||||||||||||||| ||||    
T  5207740 caacaacaatatcaaacctagatctaatttaggaatcaagtgaaaagcacaaaaccacatgcaacagataaatagagaagagaaac 5207825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 21703693 - 21703748
Alignment:
Q  256 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaa 311  Q
    ||||||||||| | ||||||||| ||| ||||||| ||||| ||||||||||||||    
T  21703693 tgttgtgaattcgaactcaaaatcacagcaataaacttagatgtgtggagcaaaaa 21703748  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 29056606 - 29056528
Alignment:
Q  353 atctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaagaa 429  Q
    ||||||||||| ||||||||| ||||||||||||  ||  ||||||||||| ||| |||| |||| ||||||| |||||    
T  29056606 atctaatctaggaatcaagtgaaaaacacaaaaccacaaacaaaagataaagagaaaagagaaacaaacacaccaagaa 29056528  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 423
Target Start/End: Original strand, 47038302 - 47038404
Alignment:
Q  325 caaacaacaacaacaatgacaa-acttaaatctaatctagaaatcaa-gtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaactaaca 420  Q
    ||||||| ||||||||| |||| || || ||||||||||| |||||| ||| ||| ||||||||||   |||||||||||| |||||||| |||| ||||    
T  47038302 caaacaataacaacaataacaacacctagatctaatctaggaatcaaagtgaaaagcacaaaaccacaagcaaaagataaagagagaagagaaacaaaca 47038401  T
Q  421 cac 423  Q
    |||    
T  47038402 cac 47038404  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 9049233 - 9049304
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 388  Q
    ||||||| |||  |||||||||||| |||||  |||||||||| ||||||| ||||| ||||||||||||||    
T  9049233 agtaaccacaagaaacaacaacaataacaaatctaaatctaatatagaaattaagtgaaaaacacaaaacca 9049304  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 30897681 - 30897636
Alignment:
Q  332 caacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaa 377  Q
    |||||||||| ||| ||||||||||||||||| || ||||||||||    
T  30897681 caacaacaataacagacttaaatctaatctaggaaccaagtgtaaa 30897636  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 32583116 - 32583156
Alignment:
Q  280 acaccaataaatttagacgtgtggagcaaaaagaagtagta 320  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  32583116 acactaattaatttagatgtgtggagcaaaaagaagtagta 32583156  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 37282498 - 37282552
Alignment:
Q  256 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaa 310  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||||    
T  37282498 tgttgtgaattcggactcaaaatcacaccaataaacttaaatgtgtggagcaaaa 37282552  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 388
Target Start/End: Original strand, 37282590 - 37282646
Alignment:
Q  332 caacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 388  Q
    |||||||||| |||||| || ||||||||||||||||| ||| ||||| ||||||||    
T  37282590 caacaacaataacaaacctagatctaatctagaaatcaggtgaaaaacgcaaaacca 37282646  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 415
Target Start/End: Original strand, 43342194 - 43342293
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccatgc-aaaagataaatagagaagaaaaac 415  Q
    ||||| || |||||||||||||||| |||||  || ||||||| ||| || ||||| |||| |||||||||| || |||||||||| ||| |||| ||||    
T  43342194 agtaaacttaaacaacaacaacaataacaaatctatatctaatataggaaccaagtataaagcacaaaaccacgcaaaaagataaagagataagagaaac 43342293  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 5460184 - 5460083
Alignment:
Q  323 ctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaaca 420  Q
    ||||||||||||||||||  |||||| || ||| ||||||| ||  || |||||| ||||||||  || |||||||||||| |||||| | |||| ||||    
T  5460184 ctcaaacaacaacaacaagaacaaacctagatcgaatctaggaacaaaatgtaaagcacaaaaccacaagcaaaagataaagagagaatagaaacaaaca 5460085  T
Q  421 ca 422  Q
    ||    
T  5460084 ca 5460083  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 3461060 - 3461007
Alignment:
Q  256 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaa 309  Q
    |||| ||||||  |||||||||||||||| ||||||||||| | ||||||||||    
T  3461060 tgttttgaattcagactcaaaattacacccataaatttagatgcgtggagcaaa 3461007  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 15820659 - 15820596
Alignment:
Q  258 ttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaac 322  Q
    ||||||||| |||||||||| | |||||||||| ||||| ||||||||||||   ||||||||||    
T  15820659 ttgtgaattcggactcaaaact-caccaataaacttagatgtgtggagcaaaggaaagtagtaac 15820596  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 16455985 - 16455953
Alignment:
Q  255 ttgttgtgaattaggactcaaaattacaccaat 287  Q
    |||||||||||| ||||||||||||||||||||    
T  16455985 ttgttgtgaattcggactcaaaattacaccaat 16455953  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 45655467 - 45655523
Alignment:
Q  255 ttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaa 311  Q
    |||||| ||||| ||||| ||||| ||| ||||||| ||||| ||||||||||||||    
T  45655467 ttgttgcgaattcggacttaaaatcacatcaataaacttagatgtgtggagcaaaaa 45655523  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 30683713 - 30683760
Alignment:
Q  274 aaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaa 321  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||||    
T  30683713 aaaatcacacccataaatttagatgtgtggagcaaaaaaaagtagtaa 30683760  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 410
Target Start/End: Original strand, 27326 - 27421
Alignment:
Q  317 agtaacctcaaacaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaaga 410  Q
    ||||||||||| || ||| || ||| ||||||||| |   ||||||| ||||||||| ||||||||||||  || ||||||| |||| ||||||||    
T  27326 agtaacctcaagcagcaaaaataataacaaacttagaagaaatctaggaatcaagtgaaaaacacaaaaccacaagcaaaaggtaaagagagaaga 27421  T

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