View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_high_13 (Length: 439)
Name: NF1262_high_13
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_13 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 13713549 - 13713987
Alignment:
| Q |
13 |
atactcaagttgtctggcgcgattcggttcgggttggatgtgctaaggtaaagtgtaatgatggccgtagcaccattattagttgtaactatgatccacc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713549 |
atactcaagttgtctggcgcgattcggttcgggttggatgtgctaaggttaagtgtaatgatggtcgtagcaccattattagttgtaactatgatccacc |
13713648 |
T |
|
| Q |
113 |
tggtaattatattggtcagaggccttttaatattagtccttttgaagtgccattgagcttcaaccatggtagttttgatgacaagtaaggtaagatagat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713649 |
tggtaattatattggtcagaggccttttgatattagtccttttgaagtgccattgagcttcaaccatggtagttttgatgacaagtaaggtaagatagat |
13713748 |
T |
|
| Q |
213 |
aagaagtgtggtgtttaatgtgaattaaataaatggatgtggccattctgtatatatgtcatagtatacagagagattcatattgtatgtgtttttagtt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713749 |
aagaagtgtggtgtttaatgtgaattaaataaatggatgtggccattctgtatatatgttatagtatacagagagattcatattgtatgtgtttttagtt |
13713848 |
T |
|
| Q |
313 |
ttgagattaatggattct------------caagcttgtttagtttggacaaattgtgtatgcatacataccaaaccaaataactataatacacttgcat |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713849 |
ttgagattaatggattctcaagcctgtgtgcaagcttgtttaatttggacaaattgtgtatgcatacataccaaaccaaataactataatacacttgcat |
13713948 |
T |
|
| Q |
401 |
aaataaaaatgtttacttcacctaaaacttggcttgcaa |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713949 |
aaataaaaatgtttacttcacctaaaacttggcttgcaa |
13713987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University