View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_high_15 (Length: 425)
Name: NF1262_high_15
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 23488175 - 23488371
Alignment:
| Q |
39 |
ggtccaaactcaagtagttctggaaattcctcaactaaaaattcaggaattcctcacgagttcattgaacatattaagaaatggagggagattgtatggg |
138 |
Q |
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| T |
23488175 |
ggtccaaactcaagtagttctggaaattcctcaactaaaaattcaggaattcctcccaagttccatgaacatattaagaaatggagggagattgtatgag |
23488274 |
T |
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| Q |
139 |
aatctagagaaaaaggatcatatattgtgaagttatgcatgtcagtattgatttttgtaagattttatagaaatcccaccacaaaatttatgtttga |
235 |
Q |
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| T |
23488275 |
aatctagagaaaaaggatcatatattgtgaagttatgcatgtcagtattgatttttgtaagattttatagaaatcccaccacaaaatttatgtttga |
23488371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 23488434 - 23488540
Alignment:
| Q |
297 |
atggtgctgggtgaagaagatgaacaaagaaaaatttaatttttcatttggataannnnnnngggtgttctgggtttctgtattaaagatcttctgtgtt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
23488434 |
atggtgctgggtgaagaagatgaacaaagaaaaatttaatttttcatttggataatttttttggg-gttctgggtttctgtattaaagatcttctgtgtt |
23488532 |
T |
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| Q |
397 |
tgatgatg |
404 |
Q |
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| T |
23488533 |
tgatgatg |
23488540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 25673077 - 25673225
Alignment:
| Q |
39 |
ggtccaaactcaagtagttctggaaattcctcaactaaaaattcaggaattcctcacgagttcattgaacatattaagaaatggagggagattgtatggg |
138 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||||| |
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| T |
25673077 |
ggtccaaattcaagtagttctgggaattcctcaactaaaaattcaggaattcctcccgagttccatgaacatattaagaaacggagggagattttatggg |
25673176 |
T |
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| Q |
139 |
aatctagagaaaaaggatcatatattgtgaagttatgcatgtcagtatt |
187 |
Q |
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||||||||||||||| |||| | |||||||||||||||||||||||||| |
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| T |
25673177 |
aatctagagaaaaagcatcagacattgtgaagttatgcatgtcagtatt |
25673225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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