View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_high_16 (Length: 424)

Name: NF1262_high_16
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_high_16
NF1262_high_16
[»] chr5 (4 HSPs)
chr5 (4-396)||(18043337-18043719)
chr5 (270-385)||(8365228-8365343)
chr5 (191-348)||(26270076-26270233)
chr5 (299-385)||(18751003-18751089)
[»] chr7 (5 HSPs)
chr7 (4-188)||(38460020-38460205)
chr7 (193-395)||(18775361-18775563)
chr7 (4-55)||(38462467-38462518)
chr7 (335-385)||(16225116-16225166)
chr7 (300-382)||(5779817-5779898)
[»] chr2 (5 HSPs)
chr2 (42-188)||(21264440-21264587)
chr2 (189-392)||(32620068-32620271)
chr2 (258-391)||(31399677-31399810)
chr2 (4-53)||(32225555-32225604)
chr2 (299-373)||(36357541-36357615)
[»] chr1 (5 HSPs)
chr1 (42-188)||(47805012-47805159)
chr1 (270-385)||(25534221-25534336)
chr1 (284-394)||(27451370-27451480)
chr1 (299-394)||(15857056-15857151)
chr1 (296-374)||(10825374-10825452)
[»] chr3 (6 HSPs)
chr3 (42-188)||(6847583-6847730)
chr3 (303-395)||(32466449-32466541)
chr3 (279-374)||(25781246-25781341)
chr3 (4-53)||(33962650-33962699)
chr3 (299-366)||(25779968-25780035)
chr3 (323-395)||(6878821-6878893)
[»] chr8 (5 HSPs)
chr8 (258-384)||(24569729-24569855)
chr8 (189-390)||(25597443-25597641)
chr8 (290-380)||(18882630-18882720)
chr8 (263-383)||(28310495-28310615)
chr8 (357-395)||(29415055-29415093)
[»] chr6 (4 HSPs)
chr6 (250-376)||(31801557-31801683)
chr6 (217-395)||(26296960-26297140)
chr6 (299-393)||(9228437-9228531)
chr6 (38-105)||(522493-522561)
[»] chr4 (2 HSPs)
chr4 (284-384)||(12462121-12462221)
chr4 (272-384)||(21167526-21167639)
[»] scaffold0043 (1 HSPs)
scaffold0043 (4-53)||(55488-55537)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 4 - 396
Target Start/End: Original strand, 18043337 - 18043719
Alignment:
Q  4 atctccaacaatatctcctacaatcttgtaacggacagctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagt 102  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||||    
T  18043337 atctcctaaaatatctcctacaatcttgtaacggacagctcacaccaacacttcccctcaagttggtgcacagagatcttgaatgcccaacttatcaagt 18043436  T
Q  103 gagttgtaaaagtctctgctacatacaacttttgtgagtatatctgataattgatctttagatttaacaaatggaaactgaattatctgctgatcacaat 202  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       
T  18043437 gagttgtaaaagtctctggtacatacaacttttgtgagtatatctgataattgatctttagatttaacaaatggaaactgaattatctactgatcac--- 18043533  T
Q  203 aaggttataagcgctctacgagtatagggtcatcaatcctgcaaggcatgtatgtctacataaggtagttagagttgggtgttactatctcatagctaat 302  Q
            |||||||||||||||||| |||||| |||||| |||| |   ||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  18043534 --------aagcgctctacgagtatatggtcattaatcctacaagtcccatatgtctacgtaaggtggttagagttgggtgttactatctcatagctaat 18043625  T
Q  303 tgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttcttact 396  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18043626 tgaaacataaaggaactagtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttcttact 18043719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 385
Target Start/End: Complemental strand, 8365343 - 8365228
Alignment:
Q  270 gttagagttgggtgttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatctta 369  Q
    |||||||| |||| ||||| ||| |||| ||||||||||||||| ||| ||  |||| |||||| ||||| |||||||| || |||||||||||||||||    
T  8365343 gttagagtggggtcttactctcttataggtaattgaaacataaaagaattgagattcttaaattgtcatctaaaggctccaacttcatctatgaatctta 8365244  T
Q  370 gaagtacatcacatac 385  Q
    ||||| ||||||||||    
T  8365243 gaagttcatcacatac 8365228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 348
Target Start/End: Original strand, 26270076 - 26270233
Alignment:
Q  191 gctgatcacaataaggttataagcgctctacgagtatagggtcatcaatcctgcaaggcatgtatgtctacataaggtagttagagttgggtgttactat 290  Q
    ||||||||||||||||||| | |||||||||||||||| |||| ||||||    |||| ||||||| ||||||||  | |||||||| | |  ||||| |    
T  26270076 gctgatcacaataaggttacacgcgctctacgagtatatggtcgtcaatctaataaggtatgtatggctacataatattgttagagtggaggcttactct 26270175  T
Q  291 ctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctc 348  Q
    |||| |  |||||||||||||||  || | | ||||||||| | ||||| ||||||||    
T  26270176 ctcagatgtaattgaaacataaaataatttggattcctaaactgtcatctaaaggctc 26270233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 385
Target Start/End: Original strand, 18751003 - 18751089
Alignment:
Q  299 taattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacatac 385  Q
    ||||||||||||||| |||  || ||| ||||||| ||||| |||||||| || ||| |||||| ||||||||||| ||||||||||    
T  18751003 taattgaaacataaaagaatcgggatttctaaattttcatctaaaggctccaacttcgtctatgcatcttagaagttcatcacatac 18751089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 38460020 - 38460205
Alignment:
Q  4 atctccaacaatatctcctacaatcttgtaacggacagctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagt 102  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||| ||| |||||||||||||||    
T  38460020 atctccaaaaatatctcctacaatcttgtaaaggacagctcacaccaacactccccctcaagttggtgcatagagatctcgaatacccaacttgtcaagt 38460119  T
Q  103 gagttgtaaaagtctctgctacatacaacttttgtgagtatatctgataattgatctttagatttaacaaatggaaactgaattat 188  Q
    |||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||    
T  38460120 gagttgaagaagtctctgctacatacagcttttgtgagtatatctgctaattgatcttcagatttaacaaatggaaattgaattat 38460205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 395
Target Start/End: Complemental strand, 18775563 - 18775361
Alignment:
Q  193 tgatcacaataaggttataagcgctctacgagtatagggtcatcaatcctgcaaggcatgtatgtctacataaggtagttagagttgggtgttactatct 292  Q
    |||||||||||||||||||  ||||||||  |||||||||| ||||||||  || |  |||||  |||| |||||| |||| ||| ||   ||||| |||    
T  18775563 tgatcacaataaggttatacacgctctacatgtatagggtcgtcaatcctataaagattgtattcctacgtaaggttgttatagtgggtcattactctct 18775464  T
Q  293 catagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttct 392  Q
    || |   ||||||||||||||| || |||| ||| |||||||||||| ||||  |  || ||||||||||||||| | ||||||||| |||||| |||||    
T  18775463 cagatgcaattgaaacataaagtaattggttttcttaaattatcatctaaagaatttaacttcatctatgaatctaataagtacatcgcataccctttct 18775364  T
Q  393 tac 395  Q
    |||    
T  18775363 tac 18775361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 38462467 - 38462518
Alignment:
Q  4 atctccaacaatatctcctacaatcttgtaacggacagctcacaccaacact 55  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  38462467 atctccaaaaatatctcctacaatcttgtaaaggacagctcacaccaacact 38462518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 16225166 - 16225116
Alignment:
Q  335 tcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacatac 385  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  16225166 tcatcaaaaggctccaatttcatatatgaatcttagaagttcatcacatac 16225116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 5779817 - 5779898
Alignment:
Q  300 aattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcaca 382  Q
    |||||||||||||| ||| | | ||||||||||| | ||| ||| ||||||| || ||||||||||||||||||| |||||||    
T  5779817 aattgaaacataaaagaattag-attcctaaattgttatctaaaagctcaaacttgatctatgaatcttagaagttcatcaca 5779898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 21264587 - 21264440
Alignment:
Q  42 ctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgagttgtaaaagtctctgctacatacaacttttgtgag 140  Q
    ||||| |||||||| ||||||||||||||||||| ||||    ||||||||||||||||||||||||| |||||| | |||| |||||  ||||||||||    
T  21264587 ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgag 21264488  T
Q  141 tatatctgataattgatctttagatttaacaaatggaaactgaattat 188  Q
    |||||||| ||| || || | |||||||||||||||||| ||||||||    
T  21264487 tatatctgctaactggtcctcagatttaacaaatggaaattgaattat 21264440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 392
Target Start/End: Original strand, 32620068 - 32620271
Alignment:
Q  189 ctgctgatcacaataaggttataagcgctctacgagtatagggtcatcaatcctgcaaggcatgtatgtctacataaggtagttagagttgggtgttact 288  Q
    ||||||||||||||||||||||||  |||| ||| |||||||||| |||| ||| || ||   ||||| |||| |||||| |||||||| |||  |||||    
T  32620068 ctgctgatcacaataaggttataaatgctcaacgggtatagggtcgtcaaccctacagggttcgtatgcctacgtaaggttgttagagtggggccttact 32620167  T
Q  289 atctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccat 388  Q
     ||| | |  |||||||| |||||| ||| |||||||||||||||||| || |||||||  || ||| |||||||| |||| |||||||||||||||| |    
T  32620168 ctcttaaaattaattgaaccataaaagaattggtattcctaaattatcttctaaaggcttcaacttcgtctatgaaccttaaaagtacatcacataccct 32620267  T
Q  389 ttct 392  Q
    ||||    
T  32620268 ttct 32620271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 391
Target Start/End: Complemental strand, 31399810 - 31399677
Alignment:
Q  258 ctacataaggtagttagagttgggtgttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcat 357  Q
    ||||||||||| |||||||| |||  ||||| | ||| || ||||||||| ||||| ||| ||||||| ||||||| | | | |||||||| || || ||    
T  31399810 ctacataaggttgttagagtggggcattactctatcagaggtaattgaaatataaaagaattggtatttctaaattgttagctaaaggctctaactttat 31399711  T
Q  358 ctatgaatcttagaagtacatcacataccatttc 391  Q
     ||||||||||||||||||||||| |||| ||||    
T  31399710 ttatgaatcttagaagtacatcacctaccctttc 31399677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 32225555 - 32225604
Alignment:
Q  4 atctccaacaatatctcctacaatcttgtaacggacagctcacaccaaca 53  Q
    ||||| || |||||||||||||||| ||||| ||||||||||||||||||    
T  32225555 atctctaaaaatatctcctacaatcgtgtaaaggacagctcacaccaaca 32225604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 36357541 - 36357615
Alignment:
Q  299 taattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaag 373  Q
    ||||||||||||||| ||| | | ||||||||||| ||||  |||||||| || ||  |||||||||||||||||    
T  36357541 taattgaaacataaaagaattaggattcctaaattgtcatataaaggctccaactttgtctatgaatcttagaag 36357615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 47805159 - 47805012
Alignment:
Q  42 ctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgagttgtaaaagtctctgctacatacaacttttgtgag 140  Q
    ||||| |||||||| ||||||||||||||||||| ||||    ||||||||||||||||||||||||| |||||| | |||| |||||  ||||||||||    
T  47805159 ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgag 47805060  T
Q  141 tatatctgataattgatctttagatttaacaaatggaaactgaattat 188  Q
    |||||||| ||| || || | |||||||||||||||||| ||||||||    
T  47805059 tatatctgctaactggtcctcagatttaacaaatggaaattgaattat 47805012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 385
Target Start/End: Complemental strand, 25534336 - 25534221
Alignment:
Q  270 gttagagttgggtgttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatctta 369  Q
    |||||||| |||| ||||| ||||| || ||||||||||||||| ||| ||| ||||||||||| ||||| |||||||| || ||| |||||||||||||    
T  25534336 gttagagtggggtcttactctctcagagataattgaaacataaaagaattgggattcctaaattgtcatctaaaggctctaacttcgtctatgaatctta 25534237  T
Q  370 gaagtacatcacatac 385  Q
    ||||| ||| ||||||    
T  25534236 gaagttcataacatac 25534221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 394
Target Start/End: Complemental strand, 27451480 - 27451370
Alignment:
Q  284 ttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacat 383  Q
    ||||| ||||| || |||||||||||||||  |  || |||||||||||| ||||| ||| ||||||| ||  |||| ||||||||||||||||||||||    
T  27451480 ttactctctcagaggtaattgaaacataaaacagttgatattcctaaattgtcatctaaaagctcaaactttgtctacgaatcttagaagtacatcacat 27451381  T
Q  384 accatttctta 394  Q
    |||||||||||    
T  27451380 accatttctta 27451370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 394
Target Start/End: Original strand, 15857056 - 15857151
Alignment:
Q  299 taattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttctta 394  Q
    ||||||||||||||| ||| ||  |||| |||||| ||||| |||||||| || ||| |||||||||||||||||||||||||| ||| |||||||    
T  15857056 taattgaaacataaaagaattgagattcttaaattgtcatctaaaggctccaacttcgtctatgaatcttagaagtacatcacacaccctttctta 15857151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 10825374 - 10825452
Alignment:
Q  296 agctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagt 374  Q
    |||||||||||||||||| ||| ||| ||||||||||| ||||| || ||||  || ||| ||||||||||||||||||    
T  10825374 agctaattgaaacataaaagaattgggattcctaaattgtcatctaagggcttcaacttcgtctatgaatcttagaagt 10825452  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 6847730 - 6847583
Alignment:
Q  42 ctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgagttgtaaaagtctctgctacatacaacttttgtgag 140  Q
    ||||| ||||| || ||||||||||||||||||| ||||    ||||||||||||||||||||||||| |||||| | |||| |||||  ||||||||||    
T  6847730 ctcacgccaacgctccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgag 6847631  T
Q  141 tatatctgataattgatctttagatttaacaaatggaaactgaattat 188  Q
    |||||||| ||| || |  | |||||||||||||||||| ||||||||    
T  6847630 tatatctgctaactggtgctcagatttaacaaatggaaattgaattat 6847583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 395
Target Start/End: Complemental strand, 32466541 - 32466449
Alignment:
Q  303 tgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttcttac 395  Q
    ||||||||||| | | ||  ||||||||||||||||| |||||||| || ||| | |||||||||||||| ||||||||||| ||||||||||    
T  32466541 tgaaacataaaagtattgagattcctaaattatcatctaaaggctccaacttcgtttatgaatcttagaaatacatcacatatcatttcttac 32466449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 25781341 - 25781246
Alignment:
Q  279 gggtgttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagt 374  Q
    |||| ||||| ||||| || ||||||||||||||| ||| ||| ||||||||||| ||||| |||||||| || ||  ||||||||||||||||||    
T  25781341 gggtcttactctctcagagttaattgaaacataaaagaattggaattcctaaattgtcatctaaaggctccaactttgtctatgaatcttagaagt 25781246  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 33962699 - 33962650
Alignment:
Q  4 atctccaacaatatctcctacaatcttgtaacggacagctcacaccaaca 53  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  33962699 atctcctaaaatatctcctacaatcttgtaaaggacagctcacaccaaca 33962650  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 25780035 - 25779968
Alignment:
Q  299 taattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatc 366  Q
    ||||||||||||||| ||| ||| ||||||||||| ||||| |||||||| || ||||| ||||||||    
T  25780035 taattgaaacataaaagaattgggattcctaaattgtcatctaaaggctccaacttcatttatgaatc 25779968  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 6878893 - 6878821
Alignment:
Q  323 attcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttcttac 395  Q
    |||| |||||| ||||| |||||||| || |||   | ||||||||||||||||| |||||||||| ||||||    
T  6878893 attcttaaattgtcatctaaaggctccaacttctcttgtgaatcttagaagtacaccacataccatctcttac 6878821  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 24569855 - 24569729
Alignment:
Q  258 ctacataaggtagttagagttgggtgttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcat 357  Q
    |||||||||||  ||||||| |||| ||||| ||||| || |||| |||||||||| ||| ||||||| ||||||| ||||| |||||||| || ||| |    
T  24569855 ctacataaggttattagagtggggtcttactctctcaaaggtaatagaaacataaaagaattggtatttctaaattgtcatctaaaggctccaacttcgt 24569756  T
Q  358 ctatgaatcttagaagtacatcacata 384  Q
    |||||||||||| ||||||||||||||    
T  24569755 ctatgaatcttataagtacatcacata 24569729  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 390
Target Start/End: Complemental strand, 25597641 - 25597443
Alignment:
Q  189 ctgctgatcacaataaggttataagcgctctacgagtatagggtcatcaatcctgcaaggcatgtatgtctacataaggtagttagagttgggtgttact 288  Q
    |||||||||||||||| |||||| |||||||| | |||||||||||| |||||| |||||  || ||  ||   ||||||  |||||| |||||||||||    
T  25597641 ctgctgatcacaataaagttatatgcgctctatgggtatagggtcattaatcctacaaggtctggatacctgtgtaaggtttttagag-tgggtgttact 25597543  T
Q  289 atctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccat 388  Q
     ||||| |  ||||||||||||||| ||  ||  ||||||||||| |||||  ||| ||| || ||| ||  ||||||||||||||||||| ||||||||    
T  25597542 ctctcagacgtaattgaaacataaaagagttgagattcctaaattgtcatcttaagactccaacttcgtc--tgaatcttagaagtacatcgcataccat 25597445  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 380
Target Start/End: Original strand, 18882630 - 18882720
Alignment:
Q  290 tctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatca 380  Q
    ||||| || ||||||||||| ||| ||| |  |||||| ||||| ||||| |||||||  || ||||||||||||||||| ||||||||||    
T  18882630 tctcaaaggtaattgaaacaaaaaagaattattattcccaaattgtcatctaaaggcttcaacttcatctatgaatcttataagtacatca 18882720  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 383
Target Start/End: Original strand, 28310495 - 28310615
Alignment:
Q  263 taaggtagttagagttgggtgttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatg 362  Q
    |||||| |||||||| |||| ||| | ||||| || ||||||||||||||| ||  ||||||||||||| | ||||  |||||||  || ||  | |||     
T  28310495 taaggttgttagagtggggtcttaatctctcaaaggtaattgaaacataaaagatttggtattcctaaaatgtcatttaaaggctacaactttgtttata 28310594  T
Q  363 aatcttagaagtacatcacat 383  Q
    |||| ||||||||||||||||    
T  28310595 aatcatagaagtacatcacat 28310615  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 29415055 - 29415093
Alignment:
Q  357 tctatgaatcttagaagtacatcacataccatttcttac 395  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  29415055 tctatgaatcttagaagtacatcacatactctttcttac 29415093  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 31801557 - 31801683
Alignment:
Q  250 atgtatgtctacataaggtagttagagttgggtgttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctca 349  Q
    ||||||| |||| |||||| |||||||| |||| | ||| | | | |  ||||||||| ||||| |||   |||||||||||||||||||||||||||      
T  31801557 atgtatgcctacgtaaggttgttagagtcgggtctcactctttaagaagtaattgaaatataaaagaatgagtattcctaaattatcatcaaaaggcttc 31801656  T
Q  350 aatttcatctatgaatcttagaagtac 376  Q
    |||||| | ||||||||||||||||||    
T  31801657 aatttcgtttatgaatcttagaagtac 31801683  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 395
Target Start/End: Original strand, 26296960 - 26297140
Alignment:
Q  217 tctacgagtatagggtcatcaatcctgcaaggcatgtatgtctacataaggtagttagagttgggtgttactatctcatagctaattgaaacataaagga 316  Q
    ||||| ||||||||||| |||||||| || ||  | |||| |||  |||||| |||||||  | |  ||||| ||| | || ||||||||||| ||| ||    
T  26296960 tctacaagtatagggtcgtcaatcctacaggggctatatgcctatgtaaggttgttagagaggtgccttactctcttagaggtaattgaaacacaaaaga 26297059  T
Q  317 actgg--tattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttcttac 395  Q
    ||||   |||||||||||| ||||| |||  ||| || ||| |||||||||||||||||| |||||||| || ||||||||    
T  26297060 actgtgatattcctaaattttcatctaaacactccaacttcgtctatgaatcttagaagtgcatcacatgccctttcttac 26297140  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 9228437 - 9228531
Alignment:
Q  299 taattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacataccatttctt 393  Q
    ||||||||||||||| ||  ||  || | |||||| ||||| |||| |||||| ||| ||||| ||||||| |||||||||||||||| ||||||    
T  9228437 taattgaaacataaaagagttgagatccataaattgtcatctaaagactcaaacttcgtctataaatcttaaaagtacatcacataccttttctt 9228531  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 522493 - 522561
Alignment:
Q  38 acagctcacaccaacacttcccctcaagttggtgcaca-agatctccaatgcccaacttgtcaagtgag 105  Q
    |||||||||||||||||| ||||||||||||||||| | | |||   |||||| |||||||||||||||    
T  522493 acagctcacaccaacactccccctcaagttggtgcatagatatcattaatgcctaacttgtcaagtgag 522561  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 12462221 - 12462121
Alignment:
Q  284 ttactatctcatagctaattgaaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttagaagtacatcacat 383  Q
    ||||| ||||| || |||||||||||||||  || | | | ||||||||||||||| ||| |||| || ||| |||||||||||||||||| ||| ||||    
T  12462221 ttactctctcagaggtaattgaaacataaattaattaggactcctaaattatcatctaaatgctccaacttcgtctatgaatcttagaagttcataacat 12462122  T
Q  384 a 384  Q
    |    
T  12462121 a 12462121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 21167639 - 21167526
Alignment:
Q  272 tagagttgggtgttactatctcatagctaattg-aaacataaaggaactggtattcctaaattatcatcaaaaggctcaaatttcatctatgaatcttag 370  Q
    ||||||||||| ||| | ||||| || |||||| |||||||| |||| ||  |||||| |||| ||||| |||| ||| || ||||| |||||| |||||    
T  21167639 tagagttgggtcttaatctctcaaaggtaattgaaaacataacggaattgagattccttaattttcatctaaagactccaacttcatttatgaaacttag 21167540  T
Q  371 aagtacatcacata 384  Q
    | || |||||||||    
T  21167539 atgttcatcacata 21167526  T

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Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 55537 - 55488
Alignment:
Q  4 atctccaacaatatctcctacaatcttgtaacggacagctcacaccaaca 53  Q
    |||||| | ||||||| |||||||||||||| ||||||||||||||||||    
T  55537 atctcctaaaatatcttctacaatcttgtaaaggacagctcacaccaaca 55488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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