View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_high_19 (Length: 399)
Name: NF1262_high_19
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 93 - 335
Target Start/End: Complemental strand, 40974669 - 40974427
Alignment:
| Q |
93 |
ctatgcactctcccttccgctacatttctctccaactgttctcgcttggaaagagcagtaatggaaagtatgttgcttctaaggcagtcaaagtggtcca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| | |
|
|
| T |
40974669 |
ctatgcactctcccttccgctacatttctctccaaccgttctcgcttggaaagagcagtaatggaaagtctattgcttctaaggcaatcaaagtggtcta |
40974570 |
T |
|
| Q |
193 |
tttctgaaacatgcaacatcatatatacatacaacaacnnnnnnnnnnnnncaacggatattgttccaattcggtttatatttgtcgaattaagaacaat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40974569 |
tttctgaaacatgcaacatcatatatacatacaacaacaaaaaatcaaaaacaacagatattgtttcaattcggtttatatttgtcgaattaagaacaat |
40974470 |
T |
|
| Q |
293 |
ctagttcggaaaacatatcctgaacaggttcatgacagaagaa |
335 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
40974469 |
ctagttcgaaaaacatatcttgaacaggttcatgacagaagaa |
40974427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 24142998 - 24143046
Alignment:
| Q |
93 |
ctatgcactctcccttccgctacatttctctccaactgttctcgcttgg |
141 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
24142998 |
ctatgcactctcccttccgctacattcctctcaaactgctctcgcttgg |
24143046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 42229059 - 42229005
Alignment:
| Q |
172 |
taaggcagtcaaagtggtccatttctgaaacatgcaacatcatatatacatacaa |
226 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
42229059 |
taaggcggtccaagtggtccatatctgaaacatgcaatatcacatatacatacaa |
42229005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 10060196 - 10060236
Alignment:
| Q |
186 |
tggtccatttctgaaacatgcaacatcatatatacatacaa |
226 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
10060196 |
tggtccatatctgaaacatgcaaaatcatgtatacatacaa |
10060236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University