View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_high_21 (Length: 397)
Name: NF1262_high_21
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_21 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 5 - 368
Target Start/End: Original strand, 4065952 - 4066300
Alignment:
| Q |
5 |
ggtagataatactcgatttagcaagaacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcgtg |
104 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4065952 |
ggtagacattactcgatttagcaagaacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcatg |
4066051 |
T |
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| Q |
105 |
ataactcataccggctctctgaacatcggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatct |
204 |
Q |
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| T |
4066052 |
ataactcataccggc---------------tctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatct |
4066136 |
T |
|
| Q |
205 |
gcaggagctctggatgctgtcaagtgcaatcgctgtgaatgataaaaattcccgtaaatagatggtctatccattaaggctgaaagtccagctttgtctc |
304 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4066137 |
gcaggagcactggatgctgtcaagtgcaatcgctgtgaatgataaaaactcccgtaaatagatggtctatccattaaggctgaaagtccagctttgtctc |
4066236 |
T |
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| Q |
305 |
gacaaggaagaagtttcaaccatggagtaagattctctgaacagacagcttcgcgcggcaatgt |
368 |
Q |
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| T |
4066237 |
gacaaggaagaagtttcaaccatggagtaagattctcttaacagacagcttcgcacggcaatgt |
4066300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 4060779 - 4061123
Alignment:
| Q |
5 |
ggtagataatactcgatttagcaagaacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcgtg |
104 |
Q |
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|||||| | ||||||| |||||||||||||| || ||||| | |||| |||||||||||||||| | ||||||||||||||||||||||||||||||| | |
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| T |
4060779 |
ggtagacattactcgacttagcaagaacacacctaccattgatttttcgtccaaatattgagctcagagaccagcttggttgaatctttatttcatcggg |
4060878 |
T |
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| Q |
105 |
ataactcataccggctctctgaacatcggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatct |
204 |
Q |
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| T |
4060879 |
agagctcaaaccagctctctgaatatcgg---------------gctgaagtacaactgtaagtgtttgttctagaataattcctgattctaacccatct |
4060963 |
T |
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| Q |
205 |
gcaggagctctggatgctgtcaagtgcaatcgctgtgaatgataaaaattcccgtaaatagatggtctatccattaaggctgaaagtccagctttgtctc |
304 |
Q |
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||| ||||| |||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4060964 |
gcaagagctttggatgctgtcaggtgcaatcgttgtgaatgataaaaactcctgtaaatagatggtctatccattaaggctgaaagtccagctttatctc |
4061063 |
T |
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| Q |
305 |
gacaaggaagaagtttcaaccatggagtaagattctctgaacagacagcttcgcgcggca |
364 |
Q |
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| T |
4061064 |
gacaaggaaggagtttcaaccatggagtaagattctctgtgcaaacagcttcgcgcggca |
4061123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 22 - 364
Target Start/End: Complemental strand, 21286234 - 21285907
Alignment:
| Q |
22 |
ttagcaagaacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcgtgataactcataccggctc |
121 |
Q |
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|||||||||||||| | ||||| | |||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||| || | |||||||| |||| |
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| T |
21286234 |
ttagcaagaacacacttaccattgatttttcatccaaatattgagctcagagagcagctaggttgaatctttatttcatcgggagagctcataccagctc |
21286135 |
T |
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| Q |
122 |
tctgaacatcggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatctgcaggagctctggatgc |
221 |
Q |
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| T |
21286134 |
tctgaatatc---------------aggctgaagtacaagtgtaagtgtttgttctagaatgattcctgaatctaacctatcttcaggagctttggatgc |
21286050 |
T |
|
| Q |
222 |
tgtcaagtgcaatcgctgtgaatgataaaaattcccgtaaatagatggtctatccattaaggctgaaagtccagctttgtctcgacaaggaagaagtttc |
321 |
Q |
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||||| ||||||||| ||||||| ||||||| || |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
21286049 |
tgtcaggtgcaatcgttgtgaatcataaaaactcgtgtaagtagatggtctatccattaaggttgaaagtccagctttatctcgacaaggaaggagtttc |
21285950 |
T |
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| Q |
322 |
aaccatggagtaagattctctgaacagacagcttcgcgcggca |
364 |
Q |
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|||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
21285949 |
aaccatggagtaagattctctgtgaagacaacttcacgcggca |
21285907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 21144533 - 21144485
Alignment:
| Q |
316 |
agtttcaaccatggagtaagattctctgaacagacagcttcgcgcggca |
364 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
21144533 |
agtttcaaccatggagtaagattctctgtgcagacagcttcacgcggca |
21144485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 209 - 364
Target Start/End: Original strand, 31373 - 31528
Alignment:
| Q |
209 |
gagctctggatgctgtcaagtgcaatcgctgtgaatgataaaaattcccgtaaatagatggtctatccattaaggctgaaagtccagctttgtctcgaca |
308 |
Q |
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|||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |
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| T |
31373 |
gagctctggatgctgtcaggtgcaatggttgtgaatgataaaaactcccgtaaatagatggtctatccattaaggctgaaagtctagctttatctcaaca |
31472 |
T |
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| Q |
309 |
aggaagaagtttcaaccatggagtaagattctctgaacagacagcttcgcgcggca |
364 |
Q |
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|||||| |||||||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
31473 |
aggaaggagtttcaaccatggagtaagattctctgtgaacacagcttcacgcggca |
31528 |
T |
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