View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_high_27 (Length: 361)
Name: NF1262_high_27
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 8138029 - 8137951
Alignment:
| Q |
269 |
atcaaagattgcaatatagggcagtaacatcaagatattatgtctctacgacaggaacatggccacagcatcaagaagt |
347 |
Q |
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| T |
8138029 |
atcaaagattgcaatatagggcagtaacatcaagatattatgtctctacgacaggaacatggccacagcatcaagaagt |
8137951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 8138194 - 8138142
Alignment:
| Q |
28 |
ttgatcggatttaagcttcattctcgatggtggttgaaatctcaaaaaccaac |
80 |
Q |
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| T |
8138194 |
ttgataggatttaagcttcattctcggtggtggttgaaatgtcaaaaaccaac |
8138142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 8138085 - 8138041
Alignment:
| Q |
205 |
tgaatggttctaatcattttttaatatattccttttatctttttt |
249 |
Q |
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| T |
8138085 |
tgaatggttcttatcattttttaatatattccttttatcttcttt |
8138041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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