View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_high_38 (Length: 288)
Name: NF1262_high_38
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 280
Target Start/End: Original strand, 2521271 - 2521520
Alignment:
| Q |
30 |
gttcatgaagattacacttagataactccaaagtgtgtttatccacactaacctttaagtttggttcgcccctgccaatctatgtatattggatgcaaaa |
129 |
Q |
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| T |
2521271 |
gttcatgaagattacacttagataactccaaagtgtgtttatccacactaacctttaagtttggttcgccc-tgccaatctatgtatattggatgcaaaa |
2521369 |
T |
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| Q |
130 |
gggtatattggcgaatacctttcaggattttggcatacataatgtcagcgcctagagccttgtgcgagcacccaacgccctacatagtaattttttcttg |
229 |
Q |
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| T |
2521370 |
gggtatattggcgaatacccttcaggattttggcatacataatgtcagcgcctagagccttgtgcgagcacccaacgccctacatagtaattttttcttg |
2521469 |
T |
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| Q |
230 |
tttttctgcagcgtatactcatctcgagtcatataatatgtctcctatgat |
280 |
Q |
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| T |
2521470 |
tttttctgcagcgtatactcatctcgagtcatataatatgtctcctatgat |
2521520 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 30283786 - 30283731
Alignment:
| Q |
72 |
ccacactaacctttaagtttggttcgcccctgccaatctatgtatattggatgcaa |
127 |
Q |
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| T |
30283786 |
ccacactaacctttaagttcgattcgcccccaccaataaatgtatattggatgcaa |
30283731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 14615288 - 14615344
Alignment:
| Q |
71 |
tccacactaacctttaagtttggttcgcccctgccaatctatgtatattggatgcaa |
127 |
Q |
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| T |
14615288 |
tccacactaacctttaggttcgattcgcccccaccaataaatgtatattggatgcaa |
14615344 |
T |
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