View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_high_47 (Length: 260)
Name: NF1262_high_47
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10101515 - 10101592
Alignment:
| Q |
1 |
aagctacactttgtagcataacaacatcatggtgccatcgttatttcgtcaaattcactgtattcatgttattgtatg |
78 |
Q |
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| T |
10101515 |
aagctacactttgtagcataacaacatcacggtgccatcgttatttcgtcaaattcactgtattcatgttattgtatg |
10101592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 8401324 - 8401406
Alignment:
| Q |
179 |
ttatcctagatatacgagcgaataggtatatgaaaatgtactttatgttgatagttgcaaagaacaa-tttacaacctacaat |
260 |
Q |
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| T |
8401324 |
ttatcctagatatatgagagaataggtatatgaaaatgtaatgtatgttgatagttgaaaagaaaaattttacaaactacaat |
8401406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10214081 - 10214020
Alignment:
| Q |
1 |
aagctacactttgtagcat-aacaacatcatggtgccatcgttatttcgtcaaattcactgt |
61 |
Q |
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||||||||||||||||||| |||||||||| ||||||| ||||||| ||| |||||||||| |
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| T |
10214081 |
aagctacactttgtagcatcaacaacatcacggtgccacagttattttgtcgaattcactgt |
10214020 |
T |
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