View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_high_49 (Length: 253)
Name: NF1262_high_49
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 40286076 - 40285870
Alignment:
| Q |
35 |
agtgtgtgatggggaagcctctaactaactgtaacaacccttaaccaatcataactaactgtaacgggagttagtttatcagttaagtctggtactaatg |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40286076 |
agtgtgtgatggggaagcctctaactaactgtaacaacccttaaccaatcataactaactgtaactagagttagtttatcagttaagtctggtactaatg |
40285977 |
T |
|
| Q |
135 |
tacaaaatacagctggcttgcatatcaagtaactatgttaaggcttagtatctaataactttactaccttccaatacaaaaatggttcaataaaccttat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40285976 |
tacaaaatacagctggcttgcatatcaagtaactatgttaaggcttagtatctaataactttactaccttccaatacaaaaatggttcaataaaccttat |
40285877 |
T |
|
| Q |
235 |
cgagaat |
241 |
Q |
| |
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||||||| |
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| T |
40285876 |
cgagaat |
40285870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 40456872 - 40457065
Alignment:
| Q |
36 |
gtgtgtgatggggaagcctctaactaactgtaacaacccttaaccaatcataactaactgtaacgggagttagtttatcagttaagtctggtactaatgt |
135 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| | ||||| |
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| T |
40456872 |
gtgtgtgaaggggaagtctctaactaactgtaacaacccttaaccaatcataactaactgcaaccagagttagtttatcagttaagtttggttcgaatgt |
40456971 |
T |
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| Q |
136 |
acaaaatacagctggcttgcatatcaagtaactatgttaaggcttagtatctaataactttactaccttccaatacaaaaatggttcaataaac |
229 |
Q |
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| T |
40456972 |
acaaaatacagctggcttgcatatcaagtaactatgttaaggcttggtatctaataactttactaccttccaatacaaaaatggttcaataaac |
40457065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 44152065 - 44152222
Alignment:
| Q |
36 |
gtgtgtgatggggaagcctctaactaactgtaacaacccttaaccaatcataactaactgtaacgggagttagtttatcagttaagtctggtactaatgt |
135 |
Q |
| |
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|||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||| |
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| T |
44152065 |
gtgtgtgaaggggaagtctctaactaacggtaacaacccttaaccaatcttaactaattgtaactagagttagtttatcagttaagtctggttctaatgt |
44152164 |
T |
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| Q |
136 |
acaaaatacagctggcttgcatatcaagtaactatgttaaggcttagtatctaataac |
193 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
44152165 |
acaaaatacagctggcttgcatttcaagcaactatgttaaggcttagtatctaataac |
44152222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 38877963 - 38877873
Alignment:
| Q |
76 |
taaccaatcataactaactgtaacgggagttagtttatcagttaagtctggtactaatgtacaaaatacagctggcttgcatatcaagtaac |
167 |
Q |
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|||||||||||| |||||| |||| | |||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||| |
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| T |
38877963 |
taaccaatcatagctaactctaactatacttagtttatcagttaagtctaat-ctaatgtacaaaatacagctggcttgtgtaacaagtaac |
38877873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 19330592 - 19330455
Alignment:
| Q |
54 |
tctaactaactgtaacaacccttaaccaatcataactaactgtaacgggagttagtttatcagttaagtctggtactaatgtacaaaatacagctggctt |
153 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
19330592 |
tctaactaactgtaacagcccttaaccaatcataactaactgtaactagagttagtttatcagttaagtctggttctaacgtacagaatacagctggctt |
19330493 |
T |
|
| Q |
154 |
gcatatcaagtaactatgttaaggcttagtatctaata |
191 |
Q |
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||||||||||| ||| | |||||||||||||||||||| |
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| T |
19330492 |
gcatatcaagttactgtattaaggcttagtatctaata |
19330455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 5205509 - 5205373
Alignment:
| Q |
53 |
ctctaactaactgtaacaacccttaaccaatcataactaactgtaacgggagttagtttatcagttaagtctggtactaatgtacaaaatacagctggct |
152 |
Q |
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|||||||||| |||||| | ||| |||||||||| ||||| |||||| ||||||||||||||||||||| | |||||||| |||| |||| || || |
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| T |
5205509 |
ctctaactaaatgtaactatcct-aaccaatcatgactaattgtaactatagttagtttatcagttaagtccaat-ctaatgtataaaacacagatgact |
5205412 |
T |
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| Q |
153 |
tgcatatcaagtaactatgttaaggcttagtatctaata |
191 |
Q |
| |
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|| ||| |||||||| ||||||||||||||||||||||| |
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| T |
5205411 |
tgtatagcaagtaaccatgttaaggcttagtatctaata |
5205373 |
T |
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