View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_high_50 (Length: 252)
Name: NF1262_high_50
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 43286826 - 43286646
Alignment:
| Q |
5 |
ttcataatttgtaggattgaatttgaagctgattacattgggcaatttggcttctactaatgacatcggctggctatgatccccgacttgcacctaaagt |
104 |
Q |
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| T |
43286826 |
ttcataatttgtaggattgaatttgaagctgattacattgggcaatctggcttctactaatgacatcggctggctatgatccccgacttgcacctaaagt |
43286727 |
T |
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| Q |
105 |
ctatgaagacatggcaagggtaacgattcatgtctctacctgtctatcagggagagaaagaaccaaagctatttgattaag |
185 |
Q |
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| T |
43286726 |
ctatgaagacatggcaagggtaacgattcatgtctctacctgtctatcagagagagaaagaaccaaagctatttgattaag |
43286646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1175432 - 1175478
Alignment:
| Q |
1 |
tttattcataatttgtaggattgaatttgaagctgattacattgggc |
47 |
Q |
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| T |
1175432 |
tttattcacaatttgcaggtttgaatatgaagctgattacattgggc |
1175478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1238009 - 1237963
Alignment:
| Q |
1 |
tttattcataatttgtaggattgaatttgaagctgattacattgggc |
47 |
Q |
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| T |
1238009 |
tttattcacaatttgcaggtttgaatttgaagcggattacattgggc |
1237963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 23906496 - 23906454
Alignment:
| Q |
68 |
catcggctggctatgatccccgacttgcacctaaagtctatga |
110 |
Q |
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| T |
23906496 |
catcggctggctatgatccccgggtggcacctaaagtctatga |
23906454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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