View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_10 (Length: 561)
Name: NF1262_low_10
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 73 - 544
Target Start/End: Original strand, 38555245 - 38555711
Alignment:
| Q |
73 |
ggatatgtgattttgaaatgactttttcactattcaatgtacacccttaaacaaactttcttataagaatgttaagttgtttgatggagcaatagcttag |
172 |
Q |
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| T |
38555245 |
ggatatgtgattttgaaatgactttttcactattcgatgtacacccttaaacaaactttcttataagaatgttaagttgtttgatggagcaatagcttag |
38555344 |
T |
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| Q |
173 |
acgaagttcgactaaatatcctcaattgcatttccttttgcttcaagtgattgatactaaggaaagaactttatctctctgttatggatttcctaacttt |
272 |
Q |
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| T |
38555345 |
acgaggttcgactaaatatcctcaattatgtatccttttgcttcaagcgattga-actgaggaaagaactttgtctctcagttatggatttcctaacttt |
38555443 |
T |
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| Q |
273 |
tcaagcataacattatgtacaattannnnnnnnnnnnnnnnnagcatcactaagaaactcataaaagtatagataaaggtagaaaagtaaagagatg-aa |
371 |
Q |
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| T |
38555444 |
tcaagcataacattatgtacaattgtttttttggatttttttagcatcactaagaaactcataaaag--tagataaaggtagaaaagtaaagagatgaaa |
38555541 |
T |
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| Q |
372 |
atgcgaattaaatttgttcgtttgattggatgtgtcgattacaatatataaactcaatatttatagccaaaaactatgactattatccgaacaatgtgtc |
471 |
Q |
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| T |
38555542 |
atgtgaattaagcttgttcgtttgattggatgtgtcgattacaagatataaactcaatatttatagccaaaaactatggctattatccgaacaa---gtc |
38555638 |
T |
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| Q |
472 |
ctacagtgagtaatccttactcggctatctttgcgggtaatttatgaatattccttgctcttgggattgtgat |
544 |
Q |
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| T |
38555639 |
ctacagtgagtagtccttacccggctatctttgcgggtaatttgtgaatattccttgctcttgggattgtgat |
38555711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 38555183 - 38555217
Alignment:
| Q |
30 |
gatataatgaaaagataaacaaccattaaaataga |
64 |
Q |
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| T |
38555183 |
gatataatgaaaagataaacaacaattaaaataga |
38555217 |
T |
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