View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_15 (Length: 495)
Name: NF1262_low_15
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 44375755 - 44375279
Alignment:
| Q |
8 |
ccaacaatatcaccgaagttaaaagtgtaatgatcatatatttaatcatg----ttttgcccgttaaaattgtaggggtcgtatatttaatcccgtgaaa |
103 |
Q |
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||||||| | ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375755 |
ccaacaaaaccaccgaagttaaaagtgtaatgatcgtatatttaatcatgcatgtttcgcccgttaaaattgtaggggtcgtatatttaatcccgtgaaa |
44375656 |
T |
|
| Q |
104 |
tttgctaatagataaaaactacctattttttgaattaggtcaatcaatttggtcttaannnnnnnnnacaagcaatttggtcttaatattagctcgtatc |
203 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44375655 |
tttgctaatagataaaaactaccttttttttgaattaggtcaatcaatttggtcttaatttttttttacaagcaatttggtcttaatattagctcgtatc |
44375556 |
T |
|
| Q |
204 |
taatttactcttaaattaattcat--------aaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttcnn |
295 |
Q |
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||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375555 |
taatttactgttaaattatttcatttactgataaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttctt |
44375456 |
T |
|
| Q |
296 |
nnnnnnnnnnnnn-------ctcttcctactacattgcgtcnnnnnnngacttcctactatacatattttgatacactacactcgcagaaactaatcatg |
388 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44375455 |
cttcttcaaaaaaaaaaaaactcttcctactacattgcgtcaaaaaaagacttcctactatacatattttgatgcactacactcgcagaaactaatcatg |
44375356 |
T |
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| Q |
389 |
aacacacatgaacacgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggaagaaatcacaaaa |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44375355 |
aacacacatgaacacgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggtagaaatcacaaaa |
44375279 |
T |
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