View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_16 (Length: 479)

Name: NF1262_low_16
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_16
NF1262_low_16
[»] chr5 (1 HSPs)
chr5 (13-451)||(37935056-37935489)
[»] chr4 (17 HSPs)
chr4 (70-231)||(10570993-10571158)
chr4 (96-231)||(10553293-10553428)
chr4 (81-157)||(10482452-10482528)
chr4 (41-159)||(10475482-10475598)
chr4 (251-326)||(10481344-10481419)
chr4 (67-159)||(10464547-10464639)
chr4 (41-159)||(10484704-10484820)
chr4 (95-157)||(10468313-10468375)
chr4 (256-329)||(10467221-10467294)
chr4 (79-159)||(829343-829422)
chr4 (251-328)||(6387392-6387469)
chr4 (78-154)||(8437026-8437102)
chr4 (78-154)||(8447380-8447456)
chr4 (250-312)||(10459796-10459858)
chr4 (254-303)||(10463461-10463510)
chr4 (251-299)||(10474407-10474455)
chr4 (248-312)||(10554468-10554532)
[»] chr3 (2 HSPs)
chr3 (30-172)||(25900962-25901102)
chr3 (82-231)||(25915030-25915179)
[»] chr8 (2 HSPs)
chr8 (70-157)||(42846149-42846236)
chr8 (256-345)||(42847376-42847465)
[»] chr2 (2 HSPs)
chr2 (240-312)||(25376341-25376413)
chr2 (81-147)||(25377304-25377370)
[»] chr1 (1 HSPs)
chr1 (67-155)||(50645220-50645306)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Complemental strand, 37935489 - 37935056
Alignment:
Q  13 aatattaaagcagtctaattatatactaacaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  37935489 aatattaaagcagtctaattatatactaacaaggattttaaagcaagtagga--aacatacatgcagtaacatgaattctagcaagtaatatgaggaaga 37935392  T
Q  113 gagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctattagtaattctaattttctcacatttattct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37935391 gagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccgcaaccaccatgttctattagtaattctaattttctcacatttattct 37935292  T
Q  213 ctctgcaattataaa-taaacgctttgtagtgagggttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacgggga 311  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  37935291 ctctgcaattttaaaataaacgctttgtagtgagggttggagatgagagttttgaaaaatttgttgacgcatttgtatcgcatgagaggtttgacgggga 37935192  T
Q  312 gaagagagagtatttccgcaatcaattcgttggggaggaacaatgccgccctcgccaccatagcttgccgttcaagttaaaccctagctacccacccagc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  37935191 gaagagagagtatttccgcaatcaattcgttggggaggaacaatgccgccctcgccaccatagcttgccgttcaagttaaaccctagcta----cccagc 37935096  T
Q  412 caccgttccaaagttaattgagaaaggaaaaggataattt 451  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  37935095 caccgttccaaagctaattgagaaaggaaaaggataattt 37935056  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 10570993 - 10571158
Alignment:
Q  70 atacatgcagtaacataaattctatc----aagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgccca 165  Q
    ||||||| ||||||||||||||||      ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  10570993 atacatgaagtaacataaattctaattaaaaagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggccca 10571092  T
Q  166 caaccaccatgttctattagtaattctaattttctcacatttattctctctgcaattataaataaa 231  Q
     ||||||||| || |||||||||||||||||| ||| | | |||| |||||||||||||| |||||    
T  10571093 taaccaccatattttattagtaattctaatttgctcgcctctattgtctctgcaattatagataaa 10571158  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 10553293 - 10553428
Alignment:
Q  96 aagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctattagtaattctaat 195  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||    
T  10553293 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10553392  T
Q  196 tttctcacatttattctctctgcaattataaataaa 231  Q
    || ||| | | |||| |||||||||||||| |||||    
T  10553393 ttgctcgcctctattgtctctgcaattatagataaa 10553428  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 10482528 - 10482452
Alignment:
Q  81 aacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 157  Q
    ||||||||||| | ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc 10482452  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 10475598 - 10475482
Alignment:
Q  41 acaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaacca 140  Q
    ||||||||||||| |||||||  || |||||||||| | ||| |||||||| | ||||||||||| |||||||| |||||||||||  | |||| ||| |    
T  10475598 acaaggattttaaggcaagta--agcaacatacatgaaataatataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaacta 10475501  T
Q  141 aactttcaacgtaatcctt 159  Q
    |||||||||||||||||||    
T  10475500 aactttcaacgtaatcctt 10475482  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 10481419 - 10481344
Alignment:
Q  251 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtattt 326  Q
    ||||||||||| ||| |||| |||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  10481419 gagatgagagtgttgtaaaacttgttgacgcacctgaatcgcataagaggtttcacggggagaagagagagtattt 10481344  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 10464639 - 10464547
Alignment:
Q  67 aacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 159  Q
    |||||| ||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||  | |||| ||| | ||||||||||||||||||    
T  10464639 aacataaatgaagtaatataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttcaacgtaatcctt 10464547  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 10484820 - 10484704
Alignment:
Q  41 acaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaacca 140  Q
    |||||||||||||  ||||||  |||||||| |||| ||||  |||||||| | ||||||||||| |||||||| |||||||||||  | |||| ||| |    
T  10484820 acaaggattttaagacaagta--agaaacatgcatgaagtagtataaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaacta 10484723  T
Q  141 aactttcaacgtaatcctt 159  Q
     ||||||||||||||||||    
T  10484722 gactttcaacgtaatcctt 10484704  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 10468375 - 10468313
Alignment:
Q  95 caagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 157  Q
    ||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||||||||||||    
T  10468375 caagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgtaatcc 10468313  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 10467294 - 10467221
Alignment:
Q  256 gagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttccg 329  Q
    |||||| ||| |||| |||||||||||  ||||| ||||||||||||||||||| | |||||| ||||||||||    
T  10467294 gagagtgttgtaaaacttgttgacgcacctgaattgcatgagaggtttcacgggcaaaagagatagtatttccg 10467221  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 829343 - 829422
Alignment:
Q  79 gtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 159  Q
    ||||||||||||| | ||||| ||||| | |||||| |||||||||||| || ||| |||||||||||||| |||||||||    
T  829343 gtaacataaattcaaacaagtcatatgtgaaagagaaactcactttcatagaatcgaaaccaaactttcaa-gtaatcctt 829422  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 6387469 - 6387392
Alignment:
Q  251 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttcc 328  Q
    ||||||| ||| |||||||| |||||||||||| |||||  ||| |||||||| |||||||||  |||||| ||||||    
T  6387469 gagatgacagtgttgaaaaacttgttgacgcatctgaatttcataagaggtttaacggggagacaagagaggatttcc 6387392  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 8437026 - 8437102
Alignment:
Q  78 agtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaa 154  Q
    ||||||| |||||| |  |||||||||| |||| ||| |||||| ||||  |||||| |||||||||||||||||||    
T  8437026 agtaacaaaaattcaaaaaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 8447380 - 8447456
Alignment:
Q  78 agtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaa 154  Q
    ||||||| |||||  | ||||||||||| |||| ||| |||||| ||||  |||||| |||||||||||||||||||    
T  8447380 agtaacaaaaattaaaacaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8447456  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 10459858 - 10459796
Alignment:
Q  250 ggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 312  Q
    ||||| |||||| |||||||||||||| |||||  ||||| |||| ||| |||||||||||||    
T  10459858 ggagaggagagtgttgaaaaatttgttaacgcacctgaattgcataagatgtttcacggggag 10459796  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 10463510 - 10463461
Alignment:
Q  254 atgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggttt 303  Q
    |||||||| || |||||||||||||||||  |||||||||| ||||||||    
T  10463510 atgagagtgttaaaaaatttgttgacgcacctgaatcgcataagaggttt 10463461  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 10474455 - 10474407
Alignment:
Q  251 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagag 299  Q
    ||||||||||| || |||||||||||||||||| |||| ||||| ||||    
T  10474455 gagatgagagtgttaaaaaatttgttgacgcatctgaaccgcataagag 10474407  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 10554468 - 10554532
Alignment:
Q  248 ttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 312  Q
    ||||||||| | ||||||||||| ||||| || || |||||| |||| ||||||||||| |||||    
T  10554468 ttggagatgcgggttttgaaaaacttgttaacacacttgaattgcataagaggtttcacagggag 10554532  T

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Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 25900962 - 25901102
Alignment:
Q  30 attatatactaacaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattg 129  Q
    |||||| ||| |||||||||||||||||||||  || || ||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||       
T  25900962 attataaactgacaaggattttaaagcaagta--agcaatatacatgaagtaacataaattctaacaagtaatatgagaaagagaaactcactttcaact 25901059  T
Q  130 agtcggaaccaaactttcaacgtaatcctttgcccacaaccac 172  Q
    ||| | |||||||||||||||||||||||| ||||||||||||    
T  25901060 agttgaaaccaaactttcaacgtaatccttggcccacaaccac 25901102  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 25915030 - 25915179
Alignment:
Q  82 acataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttcta 181  Q
    |||||||||||||||||||||||||  |||||| |||||||||||   ||| | |||||||||||||||||||||||| ||||||||||||| |  | ||    
T  25915030 acataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtacttta 25915129  T
Q  182 ttagtaattctaattttctcacatttattctctctgcaattataaataaa 231  Q
    |||||||||  ||||  ||| | | |||| |||||||| ||||| |||||    
T  25915130 ttagtaatttgaattggctcgcctctattttctctgcatttatagataaa 25915179  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 42846149 - 42846236
Alignment:
Q  70 atacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 157  Q
    ||||||| || ||||||||||| | ||||||||||| ||||||||  |||||||||| ||||||||||| ||||||||||| ||||||    
T  42846149 atacatgaagaaacataaattcaaacaagtaatatgtggaagagacgctcactttcaatgagtcggaactaaactttcaacataatcc 42846236  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 42847376 - 42847465
Alignment:
Q  256 gagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttccgcaatcaattcgttggg 345  Q
    |||||| |||||||| ||||| || ||| | |||||||| ||||||||||||| ||| |  |||| ||||||  |||||| |||||||||    
T  42847376 gagagtgttgaaaaacttgttaacacatctaaatcgcataagaggtttcacggagagcaaggagaatatttctacaatcagttcgttggg 42847465  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 25376413 - 25376341
Alignment:
Q  240 agtgagggttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 312  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||    
T  25376413 agtgaggatcggagatgagagttttgaaaaacttgttaacgcatctgaatcgcataagaggtttcaccgggag 25376341  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 25377370 - 25377304
Alignment:
Q  81 aacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttc 147  Q
    ||||| ||||| ||||||||||||| |||||||| ||||||||| | ||||||  ||||| ||||||    
T  25377370 aacattaattcaatcaagtaatatgtggaagagaaactcacttttaatgagtcaaaaccatactttc 25377304  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 50645220 - 50645306
Alignment:
Q  67 aacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaat 155  Q
    |||||||||| || ||| ||||||| | |||||||| ||  ||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  50645220 aacatacatgaagaaacgtaaattcaaacaagtaatgtg--gaagagaaactcactttcaatgagtcggaactaaactttcaacgtaat 50645306  T

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