View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_17 (Length: 479)

Name: NF1262_low_17
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_17
NF1262_low_17
[»] chr1 (5 HSPs)
chr1 (63-201)||(9666518-9666656)
chr1 (362-468)||(9663617-9663723)
chr1 (422-475)||(9666468-9666521)
chr1 (334-401)||(15226366-15226433)
chr1 (333-402)||(39489671-39489739)
[»] scaffold0041 (1 HSPs)
scaffold0041 (334-409)||(57788-57863)
[»] chr7 (3 HSPs)
chr7 (334-409)||(40915232-40915307)
chr7 (68-140)||(33702634-33702706)
chr7 (334-409)||(35120149-35120224)
[»] chr5 (4 HSPs)
chr5 (326-401)||(41306203-41306278)
chr5 (325-388)||(36952931-36952994)
chr5 (334-388)||(11443863-11443917)
chr5 (352-409)||(36874944-36875001)
[»] chr8 (2 HSPs)
chr8 (334-390)||(9461976-9462032)
chr8 (334-408)||(26923709-26923783)
[»] chr6 (1 HSPs)
chr6 (71-138)||(29203415-29203482)
[»] chr4 (3 HSPs)
chr4 (340-402)||(195465-195527)
chr4 (365-415)||(22442823-22442873)
chr4 (334-395)||(45402022-45402083)
[»] chr2 (1 HSPs)
chr2 (336-416)||(42489413-42489491)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 9666656 - 9666518
Alignment:
Q  63 gcttatagatgctttggccgaatatttagccccaagatatgagaaaggcggtttcaatgctaaagggaaagggcgcgcactnnnnnnnggtcaataagcc 162  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||       || |||||||||    
T  9666656 gcttatagatgctttggccgaatatttagccccaagatatgggaaaggcggtttcaatgctaaagggaaagggcacgccctaaaaaaaggccaataagcc 9666557  T
Q  163 ttattcacggtccatgttctttacatgaaaatacacaac 201  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  9666556 ttaatcacggtccatgttctttacatgaaaatacacaac 9666518  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 362 - 468
Target Start/End: Complemental strand, 9663723 - 9663617
Alignment:
Q  362 ttaagttattttacaataaattcaaattttgaattaattttatctacagggtaccatcaccaaccctaactccaagatacctaagaagttaccaacaaat 461  Q
    ||||||||| ||||||||| || ||||||| |||||||||| |||||| ||| | | |||| |||| |||||||||||||||||||| ||||||||||||    
T  9663723 ttaagttatcttacaataagtttaaatttttaattaattttgtctacaaggtgcgagcacccacccaaactccaagatacctaagaatttaccaacaaat 9663624  T
Q  462 taatatt 468  Q
    |||||||    
T  9663623 taatatt 9663617  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 9666521 - 9666468
Alignment:
Q  422 caaccctaactccaagatacctaagaagttaccaacaaattaatattgttggac 475  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9666521 caaccctaactccaagatacctaagaatttaccaacaaattaatatttttggac 9666468  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 15226433 - 15226366
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaattt 401  Q
    ||||||||| |||| |||||||||||| | || |||||||  ||| |||||||||||||||| |||||    
T  15226433 tcattcaatgtcatgtcatatttttatatgaatttatttttaaattaattcaaattttgaataaattt 15226366  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 402
Target Start/End: Complemental strand, 39489739 - 39489671
Alignment:
Q  333 ttcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaatttt 402  Q
    |||| |||||||||| ||||||||| || |||| |||||||| ||||||||||||| || ||| ||||||    
T  39489739 ttcaatcaatatcatgtcatatttt-atattaatttattttaaaataaattcaaatattaaataaatttt 39489671  T

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Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 57863 - 57788
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaattttatctaca 409  Q
    ||||||||||| || |||||||||||| | || |||||||| |||||||| ||||||||||| ||||||| |||||    
T  57863 tcattcaatattatgtcatatttttatatcaatttattttaaaataaatttaaattttgaatgaattttacctaca 57788  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 40915232 - 40915307
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaattttatctaca 409  Q
    ||||||||||| || |||||||||||| | || |||||||| |||||||| ||||||||||| ||||||| |||||    
T  40915232 tcattcaatattatgtcatatttttatatcaatttattttaaaataaatttaaattttgaatgaattttacctaca 40915307  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 33702706 - 33702634
Alignment:
Q  68 tagatgctttggccgaatatttagccccaagatatgagaaaggcggtttcaatgctaaagggaaagggcgcgc 140  Q
    ||||||||||||||||||||||||| ||| |||||  | ||||||||||||  ||||||||| ||||| ||||    
T  33702706 tagatgctttggccgaatatttagctccatgatatagggaaggcggtttcacggctaaagggcaagggtgcgc 33702634  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 35120224 - 35120149
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaattttatctaca 409  Q
    |||||| || ||||||||||||||||| |||| |||||||| |||||||| |||| || ||| ||||||| |||||    
T  35120224 tcattccatgtcatatcatatttttatattaatttattttaaaataaatttaaatgttaaataaattttacctaca 35120149  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 41306203 - 41306278
Alignment:
Q  326 tcattctttcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaattt 401  Q
    |||||| |||||||||||| || |||| ||||||| ||||||||||||| |||||||| ||||||| ||| |||||    
T  41306203 tcattcattcattcaatattatgtcatctttttatattaagttattttaaaataaatttaaattttaaatgaattt 41306278  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 36952994 - 36952931
Alignment:
Q  325 atcattctttcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaat 388  Q
    |||||||  |||||||||||||| |||||||||||| |||| |||||||| ||| |||||||||    
T  36952994 atcattcagtcattcaatatcatttcatatttttatattaatttattttaaaatgaattcaaat 36952931  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 11443917 - 11443863
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaat 388  Q
    ||||||||  ||||||||||||||||| |||| |||||||| |||||||| ||||    
T  11443917 tcattcaacgtcatatcatatttttatattaatttattttaaaataaatttaaat 11443863  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 36875001 - 36874944
Alignment:
Q  352 tatttttatcttaagttattttacaataaattcaaattttgaattaattttatctaca 409  Q
    ||||||| | |||| |||||||| |||||||| ||||||||||| |||||||| ||||    
T  36875001 tatttttttattaatttattttaaaataaatttaaattttgaatgaattttatttaca 36874944  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 9461976 - 9462032
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattt 390  Q
    |||||||||||||||| |||||||||| | || |||||||| |||||||| ||||||    
T  9461976 tcattcaatatcatatgatatttttatatcaatttattttagaataaatttaaattt 9462032  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 26923783 - 26923709
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaattttatctac 408  Q
    |||||| |||| || ||||| |||||  |||  |||||||| |||||||||||| ||||||| ||||||||||||    
T  26923783 tcattcgatatgatctcataattttaaattagtttattttaaaataaattcaaactttgaatgaattttatctac 26923709  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 29203415 - 29203482
Alignment:
Q  71 atgctttggccgaatatttagccccaagatatgagaaaggcggtttcaatgctaaagggaaagggcgc 138  Q
    ||||||||||||||||||||||||| ||||||  |||||| |||||   |||||||||| | ||||||    
T  29203415 atgctttggccgaatatttagccccgagatataggaaaggtggttttggtgctaaagggtatgggcgc 29203482  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 195465 - 195527
Alignment:
Q  340 aatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaatttt 402  Q
    ||||| ||| ||||||||||| |||| |||||||| |||| ||| ||||||||||| ||||||    
T  195465 aatattatagcatatttttatattaatttattttaaaatacattaaaattttgaataaatttt 195527  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 22442823 - 22442873
Alignment:
Q  365 agttattttacaataaattcaaattttgaattaattttatctacagggtac 415  Q
    |||||||||| |||||||| ||||||| ||||||||||| ||||| |||||    
T  22442823 agttattttaaaataaatttaaattttaaattaattttagctacatggtac 22442873  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 45402083 - 45402022
Alignment:
Q  334 tcattcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaat 395  Q
    ||||| ||||||||||||| ||||| | |||| ||||| || |||||||| |||||||||||    
T  45402083 tcatttaatatcatatcatttttttttattaatttattctaaaataaattaaaattttgaat 45402022  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 42489491 - 42489413
Alignment:
Q  336 attcaatatcatatcatatttttatcttaagttattttacaataaattcaaattttgaattaattttatctacagggtacc 416  Q
    |||||||||||| ||||  |||||| || | |||||||| | |||||| |||||||||||||||||| |||| || |||||    
T  42489491 attcaatatcatgtcat--ttttatatttaattattttagactaaatttaaattttgaattaattttgtctatagagtacc 42489413  T

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