View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_18 (Length: 453)
Name: NF1262_low_18
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 53 - 425
Target Start/End: Complemental strand, 34328009 - 34327638
Alignment:
| Q |
53 |
ggtgatgaatgaataagagataaggggtgtgggtctttaatggtttatggaaatatttcaacggtagttaactaccgttaagatctatcactacggtagt |
152 |
Q |
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| T |
34328009 |
ggtgatgaatgaataagagata-ggggtgtgggtctgtaatggtttagggaaatatctcaacggtagttaactaccgttaagatctatcgctacggtaat |
34327911 |
T |
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| Q |
153 |
taactacacaatgatagttaactacaaccgttannnnnnncaatggtagttaaccattgccgtggtatttacgtatttttcatgtggttttaagaaaaaa |
252 |
Q |
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| T |
34327910 |
taactacacaatgatagttaactaccaccggtatttctttcaatggtagttaaccatcgccgtggtatttatatatttttcatgtgtttttaagaaaaaa |
34327811 |
T |
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| Q |
253 |
cacaataggaaatttctaagagttactattactattgtataagaaaaactaaacagggaagacaagacacagacatcgtagaaagaaatggaagtgacaa |
352 |
Q |
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| T |
34327810 |
cacaataggaaatttctaagagttactattactattgtataagaaaaactaaacagggaagacaagacacagacatcgtagaaagaaatggaagtgacaa |
34327711 |
T |
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| Q |
353 |
gtgctgttcattcagttgggtttctcaaacaacttgaaaggttcaacagcagcaataatggacccttgttcct |
425 |
Q |
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| T |
34327710 |
gtgctgttcattcagttgggtttctcaaacaacttgaaaggttcaacagcaccaataatggacccttgttcct |
34327638 |
T |
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