View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_19 (Length: 446)
Name: NF1262_low_19
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Original strand, 54251735 - 54252162
Alignment:
| Q |
8 |
ccaataatatagagtaaaagagacagatgtaaaggctgacaataaaaatgaaacggtaataaaacagtgtttggatgttgaagtgtctgtgtagtctgca |
107 |
Q |
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| T |
54251735 |
ccaataaaatagagtaaaagagacagatgtaaaggctgacaataaaaatgaaacggtaataaaacagtgtttggatgttgaagtgtctgtgtagtctgta |
54251834 |
T |
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| Q |
108 |
cctcaaagggaccctccaaatttaaagcattactgactcaaatcctacaccattaggtgcatccctatttactgcaaaatattgtagaaacccaaagctc |
207 |
Q |
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| T |
54251835 |
cctcaaagggaccctccaaatttaaagcattactgactcaaatcctacaccattaggtgcatccctatttactgcaaaatattgtagaaacccaaagctc |
54251934 |
T |
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| Q |
208 |
ctcttctctccaacgaagaaaatgaaatgtctccttctttcccttttcttttccccctagaaatttggccttcaatccaagacaagacccaggcacaaag |
307 |
Q |
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| T |
54251935 |
ctcttctctccaacgaagaaaatgaaatgtctccttctttcctttttcttttccccctagaaatctggccttcaatccaagacaagacccaggcacaaag |
54252034 |
T |
|
| Q |
308 |
gtgaaaagtatttactaaaattaatcaatttttcttgacaannnnnnnaacaaactgaattatggaataattagctaaagtaccaataatttcaccaaat |
407 |
Q |
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| T |
54252035 |
gtgaaaagtatttactaaaattaatcaatttttcttgacaatttttttaacaaactgaattatggaataattatctaaaataccaataatttcaccaaat |
54252134 |
T |
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| Q |
408 |
ccaaaaatcatcaagcaaacacaataat |
435 |
Q |
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| T |
54252135 |
ccaaaaatcatcaagcaaacacaataat |
54252162 |
T |
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