View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_2 (Length: 1023)
Name: NF1262_low_2
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 374 - 965
Target Start/End: Complemental strand, 37028026 - 37027450
Alignment:
| Q |
374 |
gttcatgtacgtgaatgagtctatgcatgatgagaaatccataaaaagatttggagaacattactttttatatttgttttaatgactaaattgtaacttg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37028026 |
gttcatgtacgtgaatgagtctatgcatgataagaaatccataaaaagatttggagaacattactttttatatttgttttaatgactaaattgtaacttg |
37027927 |
T |
|
| Q |
474 |
ttatttataggttatttctggaggggtttgagaagtatggcaacagtggcaagggaaaatggataaagattgcacaacatgttggtacaaaaactgcaac |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37027926 |
ttatttataggttatttctggaggggtttgagaagtatggcaa---------gggaaaatggataaagattgcacaacatgttggtacaaaaactacaac |
37027836 |
T |
|
| Q |
574 |
tcaagttgctagccatgctcaaaagcatttcattcgaattaaagaaagtgctaatttatcaaaaataaggaaaagaagaagcatcttttacnnnnnnnnn |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37027835 |
tcaagttgctagccatgctcaaaagcatttcattcgaattaaagaaagtgctaagttatcaaaaataaggaaaagaagaagcatcttttacactactact |
37027736 |
T |
|
| Q |
674 |
nnnnnnnnnnnnnataactcatgggatggaaattttcaccctcttctctatagggacaacattccatctcctccttctccacctccaaatgttgaaacag |
773 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37027735 |
actacta------ataactcatgggatggaaattttcaccctcttctctatagggacaacattccatctcctccttctccacctccaaatattgaaacag |
37027642 |
T |
|
| Q |
774 |
aaccaattctggagcagatactacaacaacttcaacaagcacaagaagcgttgtggaacgacaatgtcatattgtcataacacatcaaacaatgagcata |
873 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37027641 |
aatcaattgtggagcagatactacaacaacttcaacaagcacaagaagcattgtggaacgacaatgtcatattgtcataacacatcaaacaatgagcata |
37027542 |
T |
|
| Q |
874 |
attatagagtagaacaattgtagtcatgtttctaattaaaatgctacattttcttgttttgttcttgtaatcttgtagtttgtacctatgct |
965 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37027541 |
attatagagtagaacaattgtagtcatgtttctaattaaaatgctacattttcttgttttgatcttgtaatcttgtagtttgtacctatgct |
37027450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 76 - 340
Target Start/End: Complemental strand, 37028321 - 37028060
Alignment:
| Q |
76 |
gagaatcaagaatgtatcattattcttcaaatcggcagaactaccaaaacacagatgataatggcttagccttcattgatgctgatcatgtcaagtttcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37028321 |
gagaatcaagaatgtatcattattcttcaaatcagcagaactaccaaaacacagatgataatggcttagccttcattgatgctgatcatgtcaagtttcc |
37028222 |
T |
|
| Q |
176 |
aacacactcagatggttttatttcaaaagagaatgcgtcaactgctgaaaacaaagttcctccacttgtgaataagatcaagaaagggcattatcattgg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
37028221 |
aacacactcagatggttttatttcaaaagagaatgtgtcagctgatgaaaacaaagttcctccacttgtgaataagatcaataaagggcagtatcattgg |
37028122 |
T |
|
| Q |
276 |
gatgaagaacaacacaggtatatacttattataattatttcagaaagtaattaactttacacgtg |
340 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37028121 |
gatgaagaacaacacaggtatatac---ttataattatttcagaaagtaattaactttacacgtg |
37028060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 711 - 748
Target Start/End: Original strand, 23193871 - 23193908
Alignment:
| Q |
711 |
accctcttctctatagggacaacattccatctcctcct |
748 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
23193871 |
accctcttctttatagggacatcattccatctcctcct |
23193908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 524 - 604
Target Start/End: Original strand, 32248293 - 32248373
Alignment:
| Q |
524 |
aagggaaaatggataaagattgcacaacatgttggtacaaaaactgcaactcaagttgctagccatgctcaaaagcatttc |
604 |
Q |
| |
|
|||||||| |||| || |||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32248293 |
aagggaaattggaaaatgatttcacaacatgttcgtacaagaactgcaagtcaagttgctagccatgctcaaaagcatttc |
32248373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 524 - 604
Target Start/End: Original strand, 32236099 - 32236179
Alignment:
| Q |
524 |
aagggaaaatggataaagattgcacaacatgttggtacaaaaactgcaactcaagttgctagccatgctcaaaagcatttc |
604 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32236099 |
aagggaaagtggaaactgatttcacaacatgttcgtacaagaactgcaagtcaagttgctagccatgctcaaaagcatttc |
32236179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 693 - 748
Target Start/End: Original strand, 32254693 - 32254748
Alignment:
| Q |
693 |
catgggatggaaattttcaccctcttctctatagggacaacattccatctcctcct |
748 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
32254693 |
catgggatggaaatttccaccctcttctctataaggacaacattccatttcctcct |
32254748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 691 - 733
Target Start/End: Original strand, 32236302 - 32236344
Alignment:
| Q |
691 |
ctcatgggatggaaattttcaccctcttctctatagggacaac |
733 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
32236302 |
ctcatgggatggaaatttccaccctcttctctataaggacaac |
32236344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 691 - 733
Target Start/End: Original strand, 32248496 - 32248538
Alignment:
| Q |
691 |
ctcatgggatggaaattttcaccctcttctctatagggacaac |
733 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
32248496 |
ctcatgggatggaaatttccaccctcttctctataaggacaac |
32248538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 604
Target Start/End: Original strand, 32254516 - 32254571
Alignment:
| Q |
549 |
aacatgttggtacaaaaactgcaactcaagttgctagccatgctcaaaagcatttc |
604 |
Q |
| |
|
||||| || ||||||||||| ||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
32254516 |
aacatcttagtacaaaaactccaagtcaagttggtagccatgatcaaaagcatttc |
32254571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 32254648 - 32254690
Alignment:
| Q |
711 |
accctcttctctatagggacaacattccatctcctccttctcc |
753 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
32254648 |
accctcttctctataaggacaacattccatcccctcctcctcc |
32254690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University