View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_22 (Length: 432)
Name: NF1262_low_22
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 167 - 420
Target Start/End: Complemental strand, 44155405 - 44155155
Alignment:
| Q |
167 |
ataattcgttaaaagaattaaaaatcaaattcgtcctagctaactagctagctatatatgtacggttcttactttgatgttgttgggaatttagtggtat |
266 |
Q |
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| T |
44155405 |
ataattcgttaaaagaattaaaaatcaaattcgtcctagctaactagctagctatatatgtacggttcttactttgatgttgttgggaatttagtggtat |
44155306 |
T |
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| Q |
267 |
tattataacttggtgaattatgatgatgagaagaagtactagaagttgaggtggcaatatgaatatcaaggtgagtttgagagaagctacgttttatgcc |
366 |
Q |
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| T |
44155305 |
tattataacttggtgaattatgatgatga---gaagtactagaagttgaggtggcaatatgaatatcaaggtgagtttgagagaagctacgttttatgcc |
44155209 |
T |
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| Q |
367 |
tgcagttttggtacctggaagaccaagggtaagctcagtctcctgaataatatt |
420 |
Q |
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| T |
44155208 |
tgcagttttggtacctggaagaccaagggtaagctcagtctcctgaataatatt |
44155155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 44155481 - 44155406
Alignment:
| Q |
27 |
caactttcacgtacttgcaaatactattcttcataccaatatttttcctgcttgccctcaccggtggccatcccac |
102 |
Q |
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| T |
44155481 |
caactttcacgtacttgcaaatactattcttcataccaatatttttcctgcttgccctcaccggtggccatcccac |
44155406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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