View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_23 (Length: 430)
Name: NF1262_low_23
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 9085706 - 9086118
Alignment:
| Q |
1 |
aacacttatatgggaacaaccacaaataaaatacatttaggtgcacacacatgaaagtacttatcaatttaattatttaaaataacatagtattaaagtg |
100 |
Q |
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| T |
9085706 |
aacaattatatgggaacaaccacaaataaaatacatttaggtgcacaaacataaaagtacttatcaatttaattatttaaaataacatagtattaaagtg |
9085805 |
T |
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| Q |
101 |
tttcttcttttaccttttccccatttaatttgcgtgtctgtgcgcccaaatgaaattatttgtagttgtgaccaagcaaatgtctgtcacaaaataaaag |
200 |
Q |
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| T |
9085806 |
tttcttcttttaccttttccccattt-----gcgtgtctgtgcgcccaaatgaaattatttgtagttgtgaccaagcaaatgtctgtcacaaaataaaag |
9085900 |
T |
|
| Q |
201 |
aggtgaaagaaagtctctttgtctaacacctcttttgcaacaaaacaaatcctacagttcttcccatttat---nnnnnnntacaacttaacctattgaa |
297 |
Q |
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| T |
9085901 |
aggtgaaagaaagtctctttgtctaacacctcttttgcaacaaaacaaatcctacagttcttcccatttataaaaaaaaaatacaacttaacctattgaa |
9086000 |
T |
|
| Q |
298 |
gaataacatgaatccaagtgcaaaacttgttaaaaccaaactacttcaaaatatcaaaaactttagatatttcaatttgtagaacaataataccttcaaa |
397 |
Q |
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| T |
9086001 |
gaataacatgaatccaagtgcaaaacttgttaaaaccaaactacttcaaaatatcaaaaactttagatatttcaatttgtagaacaataataccttcaaa |
9086100 |
T |
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| Q |
398 |
agacttcctatacaccat |
415 |
Q |
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| T |
9086101 |
agacttcctatacaccat |
9086118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 23951071 - 23951176
Alignment:
| Q |
6 |
ttatatgggaacaaccacaaataaaatacatttaggtgcacacacatgaaagtacttatcaatttaattatttaaaataacatagtattaaagtgtttct |
105 |
Q |
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| T |
23951071 |
ttatatagaaacaactacaaataaaatacatttagat--acacatataaaagtatttatca-tttaatcatttaaaataacatattatttaagtatttct |
23951167 |
T |
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| Q |
106 |
tcttttacc |
114 |
Q |
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||||||||| |
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| T |
23951168 |
tcttttacc |
23951176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 37644851 - 37644801
Alignment:
| Q |
16 |
acaaccacaaataaaatacatttaggtgcacacacatgaaagtacttatca |
66 |
Q |
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| T |
37644851 |
acaaccacaaataaaatacatttatgcgcgcacatataaaagtacttatca |
37644801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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