View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_26 (Length: 408)
Name: NF1262_low_26
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 37865429 - 37865170
Alignment:
| Q |
10 |
tcatagggtggaaaaacatgcggtcctcacaatttgtcctcacgaatcaagcccaatatttgagttagacccaacccaacttgtaaaatagtatcagagt |
109 |
Q |
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| T |
37865429 |
tcatagggtggaaaaacatgcggtcctcacaatttatcctcacgaatcaagcccaatatttgagttagacccaacccaacttgtaaaatagtatcagagt |
37865330 |
T |
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| Q |
110 |
atatacaagatctattggaccacttgccattaggtcatcactatcgaaccactcagatagtcctggacgtgaaggccaatatttgagttaggtcgaaccc |
209 |
Q |
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| T |
37865329 |
atatacaagatatgttggaccaccttccattaggtcatcactatcgaaccactcagatagtcctggacgtgaaggccaatatttgagttaggtcgaaccc |
37865230 |
T |
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| Q |
210 |
aatttctaaaattgtattaaatcatatcaaggattcgttgaaccatctcctatcaggtca |
269 |
Q |
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| T |
37865229 |
aatttctaaaattgtattaaatcatatcaaggattcgttgaaccatctcctatcaggtca |
37865170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 37865170 - 37865124
Alignment:
| Q |
334 |
aagagtctcgcattgaaatatgacatgtacatgtgcttatgagtggt |
380 |
Q |
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| T |
37865170 |
aagagtctcgcattgaaatatgacatgtacatgtgcttatgagtggt |
37865124 |
T |
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