View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_28 (Length: 402)

Name: NF1262_low_28
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_28
NF1262_low_28
[»] chr7 (2 HSPs)
chr7 (83-314)||(27222436-27222667)
chr7 (90-170)||(21914915-21914995)
[»] chr8 (1 HSPs)
chr8 (183-310)||(17747151-17747278)
[»] scaffold0636 (1 HSPs)
scaffold0636 (165-279)||(6503-6616)
[»] chr3 (2 HSPs)
chr3 (206-298)||(21022387-21022480)
chr3 (168-225)||(33385489-33385546)
[»] chr1 (4 HSPs)
chr1 (265-310)||(10014548-10014593)
chr1 (168-289)||(10916116-10916237)
chr1 (169-279)||(12086446-12086555)
chr1 (180-298)||(35402456-35402574)
[»] chr6 (1 HSPs)
chr6 (250-289)||(17552878-17552917)
[»] chr4 (1 HSPs)
chr4 (172-298)||(25228807-25228934)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 83 - 314
Target Start/End: Complemental strand, 27222667 - 27222436
Alignment:
Q  83 ataattctgatcttctgatatgcaatatgaagtaattctgatgtctattatgaagttctttttaattgaagagttttgttattgagatcaacttctgatc 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27222667 ataattctgatattctgatatgcaatatgaagtaattctgatgtctgttatgaagttctttttaattgaagacttttgttattgagatcaacttctgatc 27222568  T
Q  183 tcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtccttctt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27222567 tcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtccttctt 27222468  T
Q  283 agcactttgtgttgttgagagtcatgttattg 314  Q
    ||||||||||||||||||||||||||||||||    
T  27222467 agcactttgtgttgttgagagtcatgttattg 27222436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 21914915 - 21914995
Alignment:
Q  90 tgatcttctgatatgcaatatgaagtaattctgatgtctattatgaagttctttttaattgaagagttttgttattgagat 170  Q
    |||||||||||| | |||| ||||||   |||||||| || ||||||||||||||| |||||||| |||||||||| ||||    
T  21914915 tgatcttctgatctacaatctgaagtgcgtctgatgtttaatatgaagttcttttttattgaagaattttgttattaagat 21914995  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 17747278 - 17747151
Alignment:
Q  183 tcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtccttctt 282  Q
    |||||||  ||| |||||| |||||||||||| ||||| ||| ||||||||| |||||| || ||| |||||| ||||||||  || ||  |||||||||    
T  17747278 tcatattaactttgtaaatattgttcttcaattttgtaatgcccatgagatgcttctgatctcattttgaagtgcttttgatttttatgttgtccttctt 17747179  T
Q  283 agcactttgtgttgttgagagtcatgtt 310  Q
    ||||||| ||| | || ||| |||||||    
T  17747178 agcacttggtgctattaagattcatgtt 17747151  T

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Target: scaffold0636 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 6616 - 6503
Alignment:
Q  165 tgagatcaacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgat 264  Q
    ||||||| |||| ||||||| ||||| |||||| ||| |||||||||||| | || |||  |||||||| ||| ||| || ||||||| || ||||||||    
T  6616 tgagatctacttttgatctcctattttcttggtcaatcttgttcttcaatct-gttgtgatcatgagataattatgatctcattatgatgttcttttgat 6518  T
Q  265 cattctgaagtcctt 279  Q
    |||| ||||||||||    
T  6517 cattttgaagtcctt 6503  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 21022480 - 21022387
Alignment:
Q  206 ttcttcaatattgtagtgcacatgagat-gattctgagctaattatgaagtccttttgatcattctgaagtccttcttagcactttgtgttgtt 298  Q
    ||||||||| || ||||||| ||||||| | |||||| || ||| |||||| ||| |||||||| |||||||||||| | ||||| ||||||||    
T  21022480 ttcttcaattttctagtgcatatgagattgtttctgatctcattctgaagtacttctgatcattttgaagtccttctcaacacttggtgttgtt 21022387  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 33385546 - 33385489
Alignment:
Q  168 gatcaacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgca 225  Q
    ||||||||||||||||||||||| |||  | | | |||||||||||||||||||||||    
T  33385546 gatcaacttctgatctcatattttcttaatgagtcttgttcttcaatattgtagtgca 33385489  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 10014548 - 10014593
Alignment:
Q  265 cattctgaagtccttcttagcactttgtgttgttgagagtcatgtt 310  Q
    |||||| |||||||||||||||||| |||||||||||| |||||||    
T  10014548 cattcttaagtccttcttagcacttggtgttgttgagattcatgtt 10014593  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 10916237 - 10916116
Alignment:
Q  168 gatcaacttctgatctcatatttccttggtaaattttgttcttcaatatt-gtagtgcacatgagatgattctgagctaattatgaagtccttttgatca 266  Q
    ||||||||||  |||||||||| ||| ||| |||  ||||||||||| || | ||||  ||||||||| || ||| |||||| | |||| ||| ||||||    
T  10916237 gatcaacttcgaatctcatatt-cctcggtcaatcatgttcttcaatttttgcagtgaccatgagatgcttatgatctaattctaaagttcttctgatca 10916139  T
Q  267 ttctgaagtccttcttagcactt 289  Q
     |||||||| |||||||||||||    
T  10916138 atctgaagttcttcttagcactt 10916116  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 12086446 - 12086555
Alignment:
Q  169 atcaacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcatt 268  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||| || ||| || ||  || || |||| | || ||||||||| |||| ||||| ||    
T  12086446 atcagcttctgatctcatatt-ccttgatcaattttgttcttcaattttctagagctcagaagttgcttctaatctcattatgaagcccttctgatcgtt 12086544  T
Q  269 ctgaagtcctt 279  Q
     ||||||||||    
T  12086545 ttgaagtcctt 12086555  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 35402456 - 35402574
Alignment:
Q  180 atctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtcctt 279  Q
    |||||||||||||||  | ||| |||||||||||| ||||||| |   ||||| |||||| | ||  || |||||| ||| || ||||| | ||||||||    
T  35402456 atctcatatttccttattcaatcttgttcttcaattttgtagtacctttgagacgattctaatctcgttttgaagtacttctggtcattataaagtcctt 35402555  T
Q  280 cttagcactttgtgttgtt 298  Q
    ||||||||||  |||||||    
T  35402556 cttagcacttgatgttgtt 35402574  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 17552917 - 17552878
Alignment:
Q  250 tgaagtccttttgatcattctgaagtccttcttagcactt 289  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  17552917 tgaagtccttgtgatcattctaaagtccttcttagcactt 17552878  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 298
Target Start/End: Complemental strand, 25228934 - 25228807
Alignment:
Q  172 aacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctg 271  Q
    ||||| |||||||| |||||||| || ||| || ||||||||| || | |||| ||||||||| || ||| || ||| | |||  ||| ||||| || ||    
T  25228934 aacttatgatctcacatttccttagtcaatatttttcttcaattttctcgtgcccatgagatgcttttgatctcattctcaagagcttatgatctttttg 25228835  T
Q  272 aagtcctt-cttagcactttgtgttgtt 298  Q
    |||||||| || ||||||||||||||||    
T  25228834 aagtcctttctaagcactttgtgttgtt 25228807  T

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