View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1262_low_29 (Length: 400)

Name: NF1262_low_29
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1262_low_29
NF1262_low_29
[»] chr4 (1 HSPs)
chr4 (30-390)||(35894535-35894895)
[»] chr1 (5 HSPs)
chr1 (71-115)||(2436015-2436059)
chr1 (71-113)||(2435909-2435951)
chr1 (82-115)||(10378858-10378891)
chr1 (83-115)||(17470480-17470512)
chr1 (71-111)||(35117890-35117930)
[»] chr7 (2 HSPs)
chr7 (71-113)||(19265786-19265828)
chr7 (71-115)||(19266419-19266463)
[»] chr3 (2 HSPs)
chr3 (71-113)||(26573120-26573162)
chr3 (71-113)||(45620951-45620993)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 30 - 390
Target Start/End: Original strand, 35894535 - 35894895
Alignment:
Q  30 tacgcacccttaccgtgttttttacacaatatattgtcttaaacccgcgacttttcagtcacgggacaacaactttaccgttgcacaaaccttcatatga 129  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35894535 tacgcacacttaccgtgttttttacacaatatattgtcttaaacccgcgacttttcagtcacaggacaacaactttaccgttgcacaaaccttcatatga 35894634  T
Q  130 ccaaacttaaatactccatcaagcttctcataccaaccaacatggagtcgacaatctataatactaagtctttatcattttccattttaccatcataatt 229  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894635 gcaaacttaaatactccatcaagcttctcataccaaccaacatggagtcgacaatctataatactaagtctttatcattttccattttaccatcataatt 35894734  T
Q  230 ttgtttttaaaacctctgaagcctttatataacagtcacttttcttgccaaaaagtttttcattgactttaaagattttagagtataagtattcattttg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894735 ttgtttttaaaacctctgaagcctttatataacagtcacttttcttgccaaaaagtttttcattgactttaaagattttagagtataagtattcattttg 35894834  T
Q  330 attattagatcctgtttgtatcagaaaatgtttgttatcctcttttgtcacttcagaataa 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894835 attattagatcctgtttgtatcagaaaatgtttgttatcctcttttgtcacttcagaataa 35894895  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 2436015 - 2436059
Alignment:
Q  71 aacccgcgacttttcagtcacgggacaacaactttaccgttgcac 115  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||    
T  2436015 aacccgtgacctttcagtcacgtgacaacaactttaccgttgcac 2436059  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 2435909 - 2435951
Alignment:
Q  71 aacccgcgacttttcagtcacgggacaacaactttaccgttgc 113  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||    
T  2435909 aacccgtgacctttcagtcacgtgacaacaactttaccgttgc 2435951  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 10378858 - 10378891
Alignment:
Q  82 tttcagtcacgggacaacaactttaccgttgcac 115  Q
    ||||||||||| ||||||||||||||||||||||    
T  10378858 tttcagtcacgtgacaacaactttaccgttgcac 10378891  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 17470480 - 17470512
Alignment:
Q  83 ttcagtcacgggacaacaactttaccgttgcac 115  Q
    |||||||||| ||||||||||||||||||||||    
T  17470480 ttcagtcacgtgacaacaactttaccgttgcac 17470512  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 35117890 - 35117930
Alignment:
Q  71 aacccgcgacttttcagtcacgggacaacaactttaccgtt 111  Q
    |||||| ||| ||||||||||| ||||||||||||||||||    
T  35117890 aacccgtgacctttcagtcacgtgacaacaactttaccgtt 35117930  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 19265828 - 19265786
Alignment:
Q  71 aacccgcgacttttcagtcacgggacaacaactttaccgttgc 113  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||    
T  19265828 aacccgtgacctttcagtcacgtgacaacaactttaccgttgc 19265786  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 19266463 - 19266419
Alignment:
Q  71 aacccgcgacttttcagtcacgggacaacaactttaccgttgcac 115  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||||    
T  19266463 aacccacgacctttcagtcacatgacaacaactttaccgttgcac 19266419  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 26573162 - 26573120
Alignment:
Q  71 aacccgcgacttttcagtcacgggacaacaactttaccgttgc 113  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||    
T  26573162 aacccgtgacctttcagtcacgtgacaacaactttaccgttgc 26573120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 45620951 - 45620993
Alignment:
Q  71 aacccgcgacttttcagtcacgggacaacaactttaccgttgc 113  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||    
T  45620951 aacccgtgacctttcagtcacgtgacaacaactttaccgttgc 45620993  T

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