View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1262_low_3 (Length: 798)
Name: NF1262_low_3
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 45 - 560
Target Start/End: Original strand, 3004936 - 3005451
Alignment:
| Q |
45 |
agtgagatgaaagctttaaggttgtgactggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgcta |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3004936 |
agtgagacgaaagctttaaggttgtgactggtgcggttttcggacaacagactgatgtggttcaactgtgttggcagtggtgatgtgctgcggtttgcta |
3005035 |
T |
|
| Q |
145 |
cctatggttttccttttttagctttgggaggaactgttgcatgggactttggttttgttagggacatgtatggaaaagcacttatgcgtttgttgaaaag |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3005036 |
cctatggttttccttttttagctttgggagggactgttgcatgggactttggttttgttagggacatgtatggaaatgcacttatgcgtttgttgaaaag |
3005135 |
T |
|
| Q |
245 |
ccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggctgtctcgagagactgcaatcaaaattggtgctccagcagtt |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
3005136 |
ccttgaattgcactatgaaattggaggggattggaaacactactgcacacttcgacggctgtctcgagggactgcaatcaaaattggtgctccagtagtt |
3005235 |
T |
|
| Q |
345 |
gggagaaattctgttttatttataacattgatagtgtagtatggtattttgttatatggagagtaccaggtcctatgtgtatgtcttgaactgggatttg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3005236 |
gggagaaattctgttttatttataacattgatagtgtagtgtggtcttttgttatatggagtgtaccaggtcctatgtgtatgtcttgaactgggatttg |
3005335 |
T |
|
| Q |
445 |
tctttttgtattactattgattttaatgaatggttcatggagacttggttatttatttttagattatgctcacttggattttaaattaatcagttagttt |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3005336 |
tctttttgtattactattgattttaatgaatggttcatggagacttggttatttatttttagattatgctcacttggattttaaattaatcagttagttt |
3005435 |
T |
|
| Q |
545 |
tatggcttataacttt |
560 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3005436 |
tatggcttataacttt |
3005451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 599 - 700
Target Start/End: Original strand, 3005462 - 3005563
Alignment:
| Q |
599 |
aaaaataatattataaacactaacatcatgttaatacaacagatgatcaacgataaatgaatatatcatcaaaaacaaatcaatccacttgaatcataca |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3005462 |
aaaaataatattataaacactaacatcatgttaatacaacatatgatcaacgataaatgaatatatcatcaaaaataaatcaatccacttgaatcataca |
3005561 |
T |
|
| Q |
699 |
ta |
700 |
Q |
| |
|
|| |
|
|
| T |
3005562 |
ta |
3005563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 205 - 590
Target Start/End: Original strand, 7852914 - 7853299
Alignment:
| Q |
205 |
gggacatgtatggaaaagcacttatgcgtttgttgaaaagccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggct |
304 |
Q |
| |
|
||||||| |||||||| ||||| |||| || ||||||||||| |||||||||||||||||||||| || ||| |||||||| |||| |||||||||||| |
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|
| T |
7852914 |
gggacatatatggaaatgcactaatgcattcgttgaaaagccctgaattgcactatgaaattggaaagggttggaaacactactgcaaacttcgacggct |
7853013 |
T |
|
| Q |
305 |
gtctcgagagactgcaatcaaaattggtgctccagcagttgggagaaattctgttttatttataacattgatagtgtagtatggtattttgttatatgga |
404 |
Q |
| |
|
| |||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
7853014 |
gactcgagggactgcaatcaaaactggtgctccatcagttggaagaaattttgttttatttataacattgatagtgtagtgtggtcttttgttatatgga |
7853113 |
T |
|
| Q |
405 |
gagtaccaggtcctatgtgtatgtcttgaactgggatttgtctttttgtattactattgattttaatgaatggttcatggagacttggttatttattttt |
504 |
Q |
| |
|
| ||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||| | |||||||| ||||||||| |
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|
| T |
7853114 |
gtgtagcaagtcctatgtgtatgtcttggactgggatttgtctttatgtattactattgatttgaatgaatgattcatgcatacttggttctttattttt |
7853213 |
T |
|
| Q |
505 |
agattatgctcacttggattttaaattaatcagttagttttatggcttataactttgttatacgtaatgatacaagaaggatccat |
590 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
7853214 |
agattatgctcacttggatcttaaattaatcagttagatttatggcttataactttgtcatatgtaatgatacaagaaggatccat |
7853299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 606 - 681
Target Start/End: Original strand, 7853358 - 7853433
Alignment:
| Q |
606 |
atattataaacactaacatcatgttaatacaacagatgatcaacgataaatgaatatatcatcaaaaacaaatcaa |
681 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||||||| |||||| ||||| || |||||||||||||||| |
|
|
| T |
7853358 |
atattataaacactaacattatgttaatgcaatagatgatcaatgataaacgaatacattatcaaaaacaaatcaa |
7853433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 54654935 - 54655176
Alignment:
| Q |
45 |
agtgagatgaaagctttaaggttgtgactggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgcta |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
54654935 |
agtgagacgaaagctttaaggttgtgactagtgcggttttcagacagcagactgttgtggttcaactgtgttggcagtggtgatgtgctgcggtttgcta |
54655034 |
T |
|
| Q |
145 |
cctatggttttccttttttagctttgggaggaactgttgcatgggactttggttttgttagggacatgtatggaaaagcacttatgcgtttgttgaaaag |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
54655035 |
cctatggttttccttttttagctttgggagggactgttgtatgggactttggttttgttagggacctgtatggaaatgcacttatgcgtttgttgaaaag |
54655134 |
T |
|
| Q |
245 |
ccttgaattgcactatgaaattggaggggattgaaaacacta |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54655135 |
ccttgaattgcactatgaaattggaggggattggaaacacta |
54655176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 205 - 481
Target Start/End: Complemental strand, 4641809 - 4641533
Alignment:
| Q |
205 |
gggacatgtatggaaaagcacttatgcgtttgttgaaaa-gccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggc |
303 |
Q |
| |
|
|||||||||||||||| ||||| |||| || ||||||| ||| | |||| |||| ||||||||||||||||| |||||||| |||| ||||| ||| | |
|
|
| T |
4641809 |
gggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactgcaaacttcaacgac |
4641710 |
T |
|
| Q |
304 |
tgtctcgagagactgcaatcaaaattggtgctccagcagttgggagaaattctgttttatttataacattgatagtgtagtatggtattttgttatatgg |
403 |
Q |
| |
|
|||||| || | |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| | || ||||||||||| | |
|
|
| T |
4641709 |
tgtctcaaggggctgcaatcaaaattggtgctccagcattttggagaaattctggtttatttataacattgatagtgtagtgttgtcttttgttatatag |
4641610 |
T |
|
| Q |
404 |
agagtaccaggtcctatgtgtatgtcttgaactgggatttgtctttttgtattactattgattttaatgaatggttca |
481 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| |||| |
|
|
| T |
4641609 |
agtgtaccatgtcctatgtgtatgtcttgaactcagatttgtctttatgtattac-atagatttgaatgaatgattca |
4641533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 205 - 434
Target Start/End: Complemental strand, 5563160 - 5562931
Alignment:
| Q |
205 |
gggacatgtatggaaaagcacttatgcgtttgttgaaaagccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggct |
304 |
Q |
| |
|
||||||| |||||||| ||||| |||| || ||||||||||| | |||| ||||||||||||||| || ||| |||||||| ||||||||||||||||| |
|
|
| T |
5563160 |
gggacatatatggaaatgcactaatgcattcgttgaaaagccctaaattacactatgaaattggaaagggttggaaacactactgcacacttcgacggct |
5563061 |
T |
|
| Q |
305 |
gtctcgagagactgcaatcaaaattggtgctccagcagttgggagaaattctgttttatttataacattgatagtgtagtatggtattttgttatatgga |
404 |
Q |
| |
|
||||||| ||||||| |||||| | |||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
5563060 |
atctcgagggactgcattcaaaactagtgctccaatagttggaagaaattttgttttatttataacattgatagtgtagtgtggtcttttgtaatatgga |
5562961 |
T |
|
| Q |
405 |
gagtaccaggtcctatgtgtatgtcttgaa |
434 |
Q |
| |
|
| ||| |||||||||||||||||||||||| |
|
|
| T |
5562960 |
gtgtagcaggtcctatgtgtatgtcttgaa |
5562931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 681
Target Start/End: Complemental strand, 5562921 - 5562852
Alignment:
| Q |
611 |
ataaacactaacatcatgttaatacaacagatgatcaacgataaatgaatatatcatcaaaaacaaatcaa |
681 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||||| |||||| ||||| || ||| |||||||||||| |
|
|
| T |
5562921 |
ataagcactaacattatgttaatacaatagatgatcaatgataaacgaatacattatc-aaaacaaatcaa |
5562852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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