View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_30 (Length: 399)
Name: NF1262_low_30
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 44 - 387
Target Start/End: Complemental strand, 54236592 - 54236252
Alignment:
| Q |
44 |
caaaaacatgaagtatcttaccaaaatcaaattggtcaaatctacaacgccgtaataggatggctgtaatttgcgagcaattcatattttccgatcagag |
143 |
Q |
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| T |
54236592 |
caaaaacatgaagtatcttaccaaaatcaaattggtcaaatctacaacaccgtaataggatggctgtaatttgcgagcaattcatattttccgatcagag |
54236493 |
T |
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| Q |
144 |
aatcaaaatagctttgcttgactgtggtggtggatagatatccaattcccatactttatataacctttttacactgtacaccaattaaaatattcatgtt |
243 |
Q |
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| T |
54236492 |
aatcaaaatagctttgcttgactgtggtggtggatagatatccaattcccatactttatataacctttttacactgtacaccaatt-aaatattcatgtt |
54236394 |
T |
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| Q |
244 |
accgatccactaatcttattccctcttctttttcaatacaattacagtttacaaactttataataacaagcaatataattaaatttcccttttctcaaca |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |
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| T |
54236393 |
accgatccactaatcttattccctcttctttttcaatacaattacagtttacaaactttat-ataataa-caatataattaaatttcccttttctcaaca |
54236296 |
T |
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| Q |
344 |
acgaccctgcagtgcttgctgaaaatatacaacggcatcattca |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54236295 |
acgaccctgcagtgcttgctgaaaatatacaacggcatcattca |
54236252 |
T |
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