View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1262_low_32 (Length: 398)
Name: NF1262_low_32
Description: NF1262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1262_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 225 - 382
Target Start/End: Complemental strand, 30101877 - 30101720
Alignment:
| Q |
225 |
aaattcacatttttaataagtataagtaaagtgtgtggagtttaaactccaacatctacatataatatgtatgtccttgctaagttaagctcacagggtg |
324 |
Q |
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| T |
30101877 |
aaattcacatttttaataagaataagtgaggtgtgtggagtttaaattctaacatctacatataatatgtatgtccttgctaagttaagctcacagggtg |
30101778 |
T |
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| Q |
325 |
ttacaagtatttattcacatcatttaaaaatacactcaacatatattatttgattcat |
382 |
Q |
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| T |
30101777 |
ttacaagtatttatgcatatcatttaaaaatacactcaacatatattatttgattcat |
30101720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 30102107 - 30101947
Alignment:
| Q |
28 |
atagaaatacaagaatgatatcgttatcaaatatcaaatgagatatgaatgaatcttttgtttcttttcgcaagaagatatgaatgaatcttcaatatca |
127 |
Q |
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||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30102107 |
atagaaatacaagaatgatgtcgttatcaaata-------agatatcaatgaatcttttgtttcttttcgcaagaagatatgaatgaatcttcaatatca |
30102015 |
T |
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| Q |
128 |
aatgagacagtaatccgtataatcggagtatcttaata-ttatttttttcgagcaagtgtcacaagta |
194 |
Q |
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| T |
30102014 |
aatgagacaggaatccgtataatcggagtatcttaatatttttttttttcgagcaagtgtcacaagta |
30101947 |
T |
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